the port libxc cannot be upgraded and it breaks my upgrade process.

[kopinjol@…]

Hello,

I have been trying to upgrade the outdated ports on my computer. But the port "libxc" fails to upgrade and my upgrade process stops. Here is the error message:

--->  Building libxc
Error: org.macports.build for port libxc returned: command execution failed
Please see the log file for port libxc for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/main.log
Error: Unable to upgrade port: 1
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets

I tried uninstalling libxc. The uninstall process completes but when I try to upgrade outdated macport tries to upgrade the uninstalled port and the upgrade process breaks. I have attached the log file. I will appreciate any help with this.

Thanks in advance, kopinjol

here is the log file:

version:1
:msg:main --->  Computing dependencies for libxc:info:main .:debug:main libxc has no conflicts
:debug:main Searching for dependency: gcc47
:debug:main Found Dependency: receipt exists for gcc47
:msg:main 
:debug:main Executing org.macports.main (libxc)
:debug:archivefetch archivefetch phase started at Sat Apr  6 21:08:06 CDT 2013
:msg:archivefetch --->  Fetching archive for libxc
:debug:archivefetch Executing org.macports.archivefetch (libxc)
:info:archivefetch --->  libxc-2.0.1_0+gcc47.darwin_10.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
:msg:archivefetch --->  Attempting to fetch libxc-2.0.1_0+gcc47.darwin_10.x86_64.tbz2 from http://packages.macports.org/libxc
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
:msg:archivefetch --->  Attempting to fetch libxc-2.0.1_0+gcc47.darwin_10.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/libxc
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
:msg:archivefetch --->  Attempting to fetch libxc-2.0.1_0+gcc47.darwin_10.x86_64.tbz2 from http://lil.fr.packages.macports.org/libxc
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
:debug:fetch fetch phase started at Sat Apr  6 21:08:08 CDT 2013
:notice:fetch --->  Fetching distfiles for libxc
:debug:fetch Executing org.macports.fetch (libxc)
:debug:checksum checksum phase started at Sat Apr  6 21:08:08 CDT 2013
:notice:checksum --->  Verifying checksum(s) for libxc
:debug:checksum Executing org.macports.checksum (libxc)
:info:checksum --->  Checksumming libxc-2.0.1.tar.gz
:debug:checksum Correct (rmd160) checksum for libxc-2.0.1.tar.gz
:debug:checksum Correct (sha256) checksum for libxc-2.0.1.tar.gz
:debug:extract extract phase started at Sat Apr  6 21:08:08 CDT 2013
:notice:extract --->  Extracting libxc
:debug:extract Executing org.macports.extract (libxc)
:info:extract --->  Extracting libxc-2.0.1.tar.gz
:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/libxc/libxc-2.0.1.tar.gz'
:debug:extract Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
:debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/libxc/libxc-2.0.1.tar.gz' | /usr/bin/gnutar --no-same-owner -xf -'
:debug:extract Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/libxc/libxc-2.0.1.tar.gz' | /usr/bin/gnutar --no-same-owner -xf - 
:debug:patch patch phase started at Sat Apr  6 21:08:08 CDT 2013
:debug:patch Executing org.macports.patch (libxc)
:debug:configure configure phase started at Sat Apr  6 21:08:08 CDT 2013
:notice:configure --->  Configuring libxc
:debug:configure Using compiler 'MacPorts gcc 4.7'
:debug:configure Executing proc-pre-org.macports.configure-configure-0
:debug:configure Executing org.macports.configure (libxc)
:debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-O2 -m64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-O2 -m64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.6' CXX='/opt/local/bin/g++-mp-4.7' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/.CC_PRINT_OPTIONS' F90FLAGS='-O2 -m64' LDFLAGS='-L/opt/local/lib' FCFLAGS='-O2 -m64' OBJC='/opt/local/bin/gcc-mp-4.7' INSTALL='/usr/bin/install -c' F90='/opt/local/bin/gfortran-mp-4.7' FC='/opt/local/bin/gfortran-mp-4.7' FFLAGS='-O2 -m64' OBJCFLAGS='-O2 -m64' F77='/opt/local/bin/gfortran-mp-4.7' CC_PRINT_OPTIONS='YES' CC='/opt/local/bin/gcc-mp-4.7'
:debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1" && ./configure --prefix=/opt/local FCCPP="/opt/local/bin/cpp-mp-4.7 -C -ansi"'
:debug:configure Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1" && ./configure --prefix=/opt/local FCCPP="/opt/local/bin/cpp-mp-4.7 -C -ansi" 
:info:configure checking for a BSD-compatible install... /usr/bin/install -c
:info:configure checking whether build environment is sane... yes
:info:configure checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p
:info:configure checking for gawk... gawk
:info:configure checking whether make sets $(MAKE)... yes
:info:configure checking for a sed that does not truncate output... /opt/local/bin/gsed
:info:configure checking build system type... x86_64-apple-darwin10.8.0
:info:configure checking host system type... x86_64-apple-darwin10.8.0
:info:configure checking how to print strings... printf
:info:configure checking for style of include used by make... GNU
:info:configure checking for gcc... /opt/local/bin/gcc-mp-4.7
:info:configure checking whether the C compiler works... yes
:info:configure checking for C compiler default output file name... a.out
:info:configure checking for suffix of executables... 
:info:configure checking whether we are cross compiling... no
:info:configure checking for suffix of object files... o
:info:configure checking whether we are using the GNU C compiler... yes
:info:configure checking whether /opt/local/bin/gcc-mp-4.7 accepts -g... yes
:info:configure checking for /opt/local/bin/gcc-mp-4.7 option to accept ISO C89... none needed
:info:configure checking dependency style of /opt/local/bin/gcc-mp-4.7... gcc3
:info:configure checking for a sed that does not truncate output... (cached) /opt/local/bin/gsed
:info:configure checking for grep that handles long lines and -e... /usr/bin/grep
:info:configure checking for egrep... /usr/bin/grep -E
:info:configure checking for fgrep... /usr/bin/grep -F
:info:configure checking for ld used by /opt/local/bin/gcc-mp-4.7... /opt/local/bin/ld
:info:configure checking if the linker (/opt/local/bin/ld) is GNU ld... no
:info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm
:info:configure checking the name lister (/opt/local/bin/nm) interface... BSD nm
:info:configure checking whether ln -s works... yes
:info:configure checking the maximum length of command line arguments... 196608
:info:configure checking whether the shell understands some XSI constructs... yes
:info:configure checking whether the shell understands "+="... yes
:info:configure checking how to convert x86_64-apple-darwin10.8.0 file names to x86_64-apple-darwin10.8.0 format... func_convert_file_noop
:info:configure checking how to convert x86_64-apple-darwin10.8.0 file names to toolchain format... func_convert_file_noop
:info:configure checking for /opt/local/bin/ld option to reload object files... -r
:info:configure checking for objdump... no
:info:configure checking how to recognize dependent libraries... pass_all
:info:configure checking for dlltool... no
:info:configure checking how to associate runtime and link libraries... printf %s\n
:info:configure checking for ar... ar
:info:configure checking for archiver @FILE support... no
:info:configure checking for strip... strip
:info:configure checking for ranlib... ranlib
:info:configure checking command to parse /opt/local/bin/nm output from /opt/local/bin/gcc-mp-4.7 object... ok
:info:configure checking for sysroot... no
:info:configure checking for mt... no
:info:configure checking if : is a manifest tool... no
:info:configure checking for dsymutil... dsymutil
:info:configure checking for nmedit... nmedit
:info:configure checking for lipo... lipo
:info:configure checking for otool... otool
:info:configure checking for otool64... no
:info:configure checking for -single_module linker flag... yes
:info:configure checking for -exported_symbols_list linker flag... yes
:info:configure checking for -force_load linker flag... yes
:info:configure checking how to run the C preprocessor... /opt/local/bin/gcc-mp-4.7 -E
:info:configure checking for ANSI C header files... yes
:info:configure checking for sys/types.h... yes
:info:configure checking for sys/stat.h... yes
:info:configure checking for stdlib.h... yes
:info:configure checking for string.h... yes
:info:configure checking for memory.h... yes
:info:configure checking for strings.h... yes
:info:configure checking for inttypes.h... yes
:info:configure checking for stdint.h... yes
:info:configure checking for unistd.h... yes
:info:configure checking for dlfcn.h... yes
:info:configure checking for objdir... .libs
:info:configure checking if /opt/local/bin/gcc-mp-4.7 supports -fno-rtti -fno-exceptions... no
:info:configure checking for /opt/local/bin/gcc-mp-4.7 option to produce PIC... -fno-common -DPIC
:info:configure checking if /opt/local/bin/gcc-mp-4.7 PIC flag -fno-common -DPIC works... yes
:info:configure checking if /opt/local/bin/gcc-mp-4.7 static flag -static works... no
:info:configure checking if /opt/local/bin/gcc-mp-4.7 supports -c -o file.o... yes
:info:configure checking if /opt/local/bin/gcc-mp-4.7 supports -c -o file.o... (cached) yes
:info:configure checking whether the /opt/local/bin/gcc-mp-4.7 linker (/opt/local/bin/ld) supports shared libraries... yes
:info:configure checking dynamic linker characteristics... darwin10.8.0 dyld
:info:configure checking how to hardcode library paths into programs... immediate
:info:configure checking whether stripping libraries is possible... yes
:info:configure checking if libtool supports shared libraries... yes
:info:configure checking whether to build shared libraries... no
:info:configure checking whether to build static libraries... yes
:info:configure checking for gcc... (cached) /opt/local/bin/gcc-mp-4.7
:info:configure checking whether we are using the GNU C compiler... (cached) yes
:info:configure checking whether /opt/local/bin/gcc-mp-4.7 accepts -g... (cached) yes
:info:configure checking for /opt/local/bin/gcc-mp-4.7 option to accept ISO C89... (cached) none needed
:info:configure checking dependency style of /opt/local/bin/gcc-mp-4.7... (cached) gcc3
:info:configure checking whether /opt/local/bin/gcc-mp-4.7 and cc understand -c and -o together... yes
:info:configure checking for inline... inline
:info:configure checking for ANSI C header files... (cached) yes
:info:configure checking for size_t... yes
:info:configure checking for working alloca.h... yes
:info:configure checking for alloca... yes
:info:configure checking size of void*... 8
:info:configure checking for sqrtf in -lm... yes
:info:configure checking for cbrt in -lm... yes
:info:configure checking for cbrtf in -lm... yes
:info:configure checking for feenableexcept in -lm... no
:info:configure checking whether we are using the GNU Fortran compiler... yes
:info:configure checking whether /opt/local/bin/gfortran-mp-4.7 accepts -g... yes
:info:configure checking if libtool supports shared libraries... yes
:info:configure checking whether to build shared libraries... no
:info:configure checking whether to build static libraries... yes
:info:configure checking for /opt/local/bin/gfortran-mp-4.7 option to produce PIC... -fno-common
:info:configure checking if /opt/local/bin/gfortran-mp-4.7 PIC flag -fno-common works... yes
:info:configure checking if /opt/local/bin/gfortran-mp-4.7 static flag -static works... no
:info:configure checking if /opt/local/bin/gfortran-mp-4.7 supports -c -o file.o... yes
:info:configure checking if /opt/local/bin/gfortran-mp-4.7 supports -c -o file.o... (cached) yes
:info:configure checking whether the /opt/local/bin/gfortran-mp-4.7 linker (/opt/local/bin/ld) supports shared libraries... yes
:info:configure checking dynamic linker characteristics... darwin10.8.0 dyld
:info:configure checking how to hardcode library paths into programs... immediate
:info:configure checking for Fortran flag to compile .f90 files... none
:info:configure configure: Using FCFLAGS="-O2 -m64"
:info:configure checking how to get verbose linking output from /opt/local/bin/gfortran-mp-4.7... -v
:info:configure checking for Fortran libraries of /opt/local/bin/gfortran-mp-4.7...  -L/opt/local/lib -L/opt/local/lib/gcc47/gcc/x86_64-apple-darwin10/4.7.2 -L/opt/local/lib/gcc47/gcc/x86_64-apple-darwin10/4.7.2/../../.. -lgfortran -lquadmath -lm
:info:configure checking for dummy main to link with Fortran libraries... none
:info:configure checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
:info:configure checking whether the compiler accepts very long lines... no
:info:configure checking whether the compiler accepts "line-number" lines cast by the preprocessor... yes
:info:configure checking fortran 90 modules extension... mod
:info:configure checking for the size of a Fortran integer... 4 bytes
:info:configure checking for which C type corresponds to Fortran integer... int
:info:configure configure: creating ./config.status
:info:configure config.status: creating Makefile
:info:configure config.status: creating xc_version.h
:info:configure config.status: creating src/Makefile
:info:configure config.status: creating testsuite/Makefile
:info:configure config.status: creating build/Makefile
:info:configure config.status: creating build/libxc.pc
:info:configure config.status: creating build/libxc.spec
:info:configure config.status: creating config.h
:info:configure config.status: executing depfiles commands
:info:configure config.status: executing libtool commands
:debug:build build phase started at Sat Apr  6 21:08:37 CDT 2013
:notice:build --->  Building libxc
:debug:build Executing org.macports.build (libxc)
:debug:build port disallows a parallel build
:debug:build Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
:debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1" && /usr/bin/make -w all'
:debug:build Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1" && /usr/bin/make -w all 
:info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1'
:info:build /usr/bin/make  all-recursive
:info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1'
:info:build Making all in build
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1/build'
:info:build make[2]: Nothing to be done for `all'.
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1/build'
:info:build Making all in src
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1/src'
:info:build ./get_funcs.pl . ..
:info:build /usr/bin/make  all-am
:info:build make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1/src'
:info:build /bin/sh ../libtool  --tag=CC --tag=F77  --mode=compile /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -O2 -m64 -MT libxc_la-special_functions.lo -MD -MP -MF .deps/libxc_la-special_functions.Tpo -c -o libxc_la-special_functions.lo `test -f 'special_functions.c' || echo './'`special_functions.c
:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-special_functions.lo -MD -MP -MF .deps/libxc_la-special_functions.Tpo -c special_functions.c -o libxc_la-special_functions.o
:info:build mv -f .deps/libxc_la-special_functions.Tpo .deps/libxc_la-special_functions.Plo
:info:build /bin/sh ../libtool  --tag=CC --tag=F77  --mode=compile /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -O2 -m64 -MT libxc_la-bessel.lo -MD -MP -MF .deps/libxc_la-bessel.Tpo -c -o libxc_la-bessel.lo `test -f 'bessel.c' || echo './'`bessel.c
:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-bessel.lo -MD -MP -MF .deps/libxc_la-bessel.Tpo -c bessel.c -o libxc_la-bessel.o
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:info:build /bin/sh ../libtool  --tag=CC --tag=F77  --mode=compile /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -O2 -m64 -MT libxc_la-expint_e1.lo -MD -MP -MF .deps/libxc_la-expint_e1.Tpo -c -o libxc_la-expint_e1.lo `test -f 'expint_e1.c' || echo './'`expint_e1.c
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:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-expint_e1.lo -MD -MP -MF .deps/libxc_la-expint_e1.Tpo -c expint_e1.c -o libxc_la-expint_e1.o
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:info:build /bin/sh ../libtool  --tag=CC --tag=F77  --mode=compile /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -O2 -m64 -MT libxc_la-integrate.lo -MD -MP -MF .deps/libxc_la-integrate.Tpo -c -o libxc_la-integrate.lo `test -f 'integrate.c' || echo './'`integrate.c
:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-integrate.lo -MD -MP -MF .deps/libxc_la-integrate.Tpo -c integrate.c -o libxc_la-integrate.o
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:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-util.lo -MD -MP -MF .deps/libxc_la-util.Tpo -c util.c -o libxc_la-util.o
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:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-mix_func.lo -MD -MP -MF .deps/libxc_la-mix_func.Tpo -c mix_func.c -o libxc_la-mix_func.o
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:info:build /bin/sh ../libtool  --tag=CC --tag=F77  --mode=compile /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -O2 -m64 -MT libxc_la-version.lo -MD -MP -MF .deps/libxc_la-version.Tpo -c -o libxc_la-version.lo `test -f 'version.c' || echo './'`version.c
:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-version.lo -MD -MP -MF .deps/libxc_la-version.Tpo -c version.c -o libxc_la-version.o
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:info:build libtool: ignoring unknown tag F77
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:info:build libtool: ignoring unknown tag F77
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:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-mgga_c_bc95.lo -MD -MP -MF .deps/libxc_la-mgga_c_bc95.Tpo -c mgga_c_bc95.c -o libxc_la-mgga_c_bc95.o
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:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-hyb_mgga_xc_m05.lo -MD -MP -MF .deps/libxc_la-hyb_mgga_xc_m05.Tpo -c hyb_mgga_xc_m05.c -o libxc_la-hyb_mgga_xc_m05.o
:info:build mv -f .deps/libxc_la-hyb_mgga_xc_m05.Tpo .deps/libxc_la-hyb_mgga_xc_m05.Plo
:info:build /bin/sh ../libtool  --tag=CC --tag=F77  --mode=compile /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -O2 -m64 -MT libxc_la-xc_f.lo -MD -MP -MF .deps/libxc_la-xc_f.Tpo -c -o libxc_la-xc_f.lo `test -f 'xc_f.c' || echo './'`xc_f.c
:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -O2 -m64 -MT libxc_la-xc_f.lo -MD -MP -MF .deps/libxc_la-xc_f.Tpo -c xc_f.c -o libxc_la-xc_f.o
:info:build mv -f .deps/libxc_la-xc_f.Tpo .deps/libxc_la-xc_f.Plo
:info:build /bin/sh ../libtool  --tag=FC --tag=F77  --mode=compile /opt/local/bin/gfortran-mp-4.7  -O2 -m64 -c -o libxc_la-libxc_funcs.lo  `test -f 'libxc_funcs.f90' || echo './'`libxc_funcs.f90
:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gfortran-mp-4.7 -O2 -m64 -c libxc_funcs.f90 -o libxc_la-libxc_funcs.o
:info:build /opt/local/bin/gfortran-mp-4.7  -O2 -m64 -c -o libxc_funcs.o  libxc_funcs.f90
:info:build /opt/local/bin/cpp-mp-4.7 -C -ansi -I/opt/local/include  ./libxc_master.F90 > ../src/libxc.f90
:info:build /bin/sh ../libtool  --tag=FC --tag=F77  --mode=compile /opt/local/bin/gfortran-mp-4.7  -O2 -m64 -c -o libxc_la-libxc.lo  `test -f 'libxc.f90' || echo './'`libxc.f90
:info:build libtool: ignoring unknown tag F77
:info:build libtool: compile:  /opt/local/bin/gfortran-mp-4.7 -O2 -m64 -c libxc.f90 -o libxc_la-libxc.o
:info:build /bin/sh ../libtool --tag=FC --tag=F77  --mode=link /opt/local/bin/gfortran-mp-4.7  -O2 -m64 -version-info 1:1:0 -L/opt/local/lib -o libxc.la -rpath /opt/local/lib libxc_la-special_functions.lo libxc_la-bessel.lo libxc_la-expint_e1.lo libxc_la-integrate.lo libxc_la-util.lo libxc_la-mix_func.lo libxc_la-functionals.lo libxc_la-version.lo libxc_la-lda.lo libxc_la-lda_x.lo libxc_la-lda_x_1d.lo libxc_la-lda_x_2d.lo libxc_la-lda_c_wigner.lo libxc_la-lda_c_gombas.lo libxc_la-lda_c_rpa.lo libxc_la-lda_c_hl.lo libxc_la-lda_c_vwn.lo libxc_la-lda_c_pz.lo libxc_la-lda_c_pw.lo libxc_la-lda_c_ml1.lo libxc_la-lda_c_rc04.lo libxc_la-lda_xc_teter93.lo libxc_la-lda_c_1d_csc.lo libxc_la-lda_c_1d_loos.lo libxc_la-lda_c_2d_amgb.lo libxc_la-lda_c_2d_prm.lo libxc_la-stoll.lo libxc_la-lda_k_tf.lo libxc_la-gga.lo libxc_la-gga_x_lg93.lo libxc_la-gga_x_pbe.lo libxc_la-gga_x_rpbe.lo libxc_la-gga_x_pbea.lo libxc_la-gga_x_mpbe.lo libxc_la-gga_x_herman.lo libxc_la-gga_x_b86.lo libxc_la-gga_x_b86_mgc.lo libxc_la-gga_x_b88.lo libxc_la-gga_x_g96.lo libxc_la-gga_x_pw86.lo libxc_la-gga_x_pw91.lo libxc_la-gga_x_optx.lo libxc_la-gga_x_airy.lo libxc_la-gga_x_c09x.lo libxc_la-gga_x_dk87.lo libxc_la-gga_x_ft97.lo libxc_la-gga_x_wc.lo libxc_la-gga_x_am05.lo libxc_la-gga_x_bayesian.lo libxc_la-gga_x_kt.lo libxc_la-gga_x_htbs.lo libxc_la-gga_c_pbe.lo libxc_la-gga_c_lyp.lo libxc_la-gga_c_p86.lo libxc_la-gga_c_pw91.lo libxc_la-gga_c_am05.lo libxc_la-gga_c_lm.lo libxc_la-gga_c_wl.lo libxc_la-gga_c_wi.lo libxc_la-gga_x_lb.lo libxc_la-gga_xc_b97.lo libxc_la-gga_xc_edf1.lo libxc_la-gga_xc_1w.lo libxc_la-gga_c_optc.lo libxc_la-gga_c_tca.lo libxc_la-gga_x_bpccac.lo libxc_la-gga_x_sogga11.lo libxc_la-gga_c_sogga11.lo libxc_la-gga_xc_th.lo libxc_la-gga_x_wpbeh.lo libxc_la-gga_x_hjs.lo libxc_la-gga_x_ityh.lo libxc_la-gga_x_ssb_sw.lo libxc_la-gga_c_ft97.lo libxc_la-gga_c_op.lo libxc_la-gga_x_2d_b86.lo libxc_la-gga_x_2d_b86_mgc.lo libxc_la-gga_x_2d_b88.lo libxc_la-gga_x_2d_pbe.lo libxc_la-gga_k_tflw.lo libxc_la-gga_k_pearson.lo libxc_la-gga_k_ol1.lo libxc_la-gga_k_ol2.lo libxc_la-gga_k_dk.lo libxc_la-hyb_gga_xc_b3lyp.lo libxc_la-hyb_gga_xc_o3lyp.lo libxc_la-hyb_gga_xc_pbeh.lo libxc_la-hyb_gga_xc_b1wc.lo libxc_la-hyb_gga_xc_b97.lo libxc_la-hyb_gga_xc_hse.lo libxc_la-hyb_gga_xc_cam_b3lyp.lo libxc_la-mgga.lo libxc_la-mgga_x_lta.lo libxc_la-mgga_x_tpss.lo libxc_la-mgga_x_br89.lo libxc_la-mgga_x_gvt4.lo libxc_la-mgga_x_m06l.lo libxc_la-mgga_x_tau_hcth.lo libxc_la-mgga_x_2d_prhg07.lo libxc_la-mgga_x_pkzb.lo libxc_la-mgga_x_m05.lo libxc_la-mgga_x_m08.lo libxc_la-mgga_c_vsxc.lo libxc_la-mgga_c_pkzb.lo libxc_la-mgga_c_bc95.lo libxc_la-hyb_mgga_xc_m05.lo libxc_la-xc_f.lo libxc_la-libxc_funcs.lo libxc_la-libxc.lo   
:info:build libtool: ignoring unknown tag F77
:info:build libtool: link: ar cru .libs/libxc.a  libxc_la-special_functions.o libxc_la-bessel.o libxc_la-expint_e1.o libxc_la-integrate.o libxc_la-util.o libxc_la-mix_func.o libxc_la-functionals.o libxc_la-version.o libxc_la-lda.o libxc_la-lda_x.o libxc_la-lda_x_1d.o libxc_la-lda_x_2d.o libxc_la-lda_c_wigner.o libxc_la-lda_c_gombas.o libxc_la-lda_c_rpa.o libxc_la-lda_c_hl.o libxc_la-lda_c_vwn.o libxc_la-lda_c_pz.o libxc_la-lda_c_pw.o libxc_la-lda_c_ml1.o libxc_la-lda_c_rc04.o libxc_la-lda_xc_teter93.o libxc_la-lda_c_1d_csc.o libxc_la-lda_c_1d_loos.o libxc_la-lda_c_2d_amgb.o libxc_la-lda_c_2d_prm.o libxc_la-stoll.o libxc_la-lda_k_tf.o libxc_la-gga.o libxc_la-gga_x_lg93.o libxc_la-gga_x_pbe.o libxc_la-gga_x_rpbe.o libxc_la-gga_x_pbea.o libxc_la-gga_x_mpbe.o libxc_la-gga_x_herman.o libxc_la-gga_x_b86.o libxc_la-gga_x_b86_mgc.o libxc_la-gga_x_b88.o libxc_la-gga_x_g96.o libxc_la-gga_x_pw86.o libxc_la-gga_x_pw91.o libxc_la-gga_x_optx.o libxc_la-gga_x_airy.o libxc_la-gga_x_c09x.o libxc_la-gga_x_dk87.o libxc_la-gga_x_ft97.o libxc_la-gga_x_wc.o libxc_la-gga_x_am05.o libxc_la-gga_x_bayesian.o libxc_la-gga_x_kt.o libxc_la-gga_x_htbs.o libxc_la-gga_c_pbe.o libxc_la-gga_c_lyp.o libxc_la-gga_c_p86.o libxc_la-gga_c_pw91.o libxc_la-gga_c_am05.o libxc_la-gga_c_lm.o libxc_la-gga_c_wl.o libxc_la-gga_c_wi.o libxc_la-gga_x_lb.o libxc_la-gga_xc_b97.o libxc_la-gga_xc_edf1.o libxc_la-gga_xc_1w.o libxc_la-gga_c_optc.o libxc_la-gga_c_tca.o libxc_la-gga_x_bpccac.o libxc_la-gga_x_sogga11.o libxc_la-gga_c_sogga11.o libxc_la-gga_xc_th.o libxc_la-gga_x_wpbeh.o libxc_la-gga_x_hjs.o libxc_la-gga_x_ityh.o libxc_la-gga_x_ssb_sw.o libxc_la-gga_c_ft97.o libxc_la-gga_c_op.o libxc_la-gga_x_2d_b86.o libxc_la-gga_x_2d_b86_mgc.o libxc_la-gga_x_2d_b88.o libxc_la-gga_x_2d_pbe.o libxc_la-gga_k_tflw.o libxc_la-gga_k_pearson.o libxc_la-gga_k_ol1.o libxc_la-gga_k_ol2.o libxc_la-gga_k_dk.o libxc_la-hyb_gga_xc_b3lyp.o libxc_la-hyb_gga_xc_o3lyp.o libxc_la-hyb_gga_xc_pbeh.o libxc_la-hyb_gga_xc_b1wc.o libxc_la-hyb_gga_xc_b97.o libxc_la-hyb_gga_xc_hse.o libxc_la-hyb_gga_xc_cam_b3lyp.o libxc_la-mgga.o libxc_la-mgga_x_lta.o libxc_la-mgga_x_tpss.o libxc_la-mgga_x_br89.o libxc_la-mgga_x_gvt4.o libxc_la-mgga_x_m06l.o libxc_la-mgga_x_tau_hcth.o libxc_la-mgga_x_2d_prhg07.o libxc_la-mgga_x_pkzb.o libxc_la-mgga_x_m05.o libxc_la-mgga_x_m08.o libxc_la-mgga_c_vsxc.o libxc_la-mgga_c_pkzb.o libxc_la-mgga_c_bc95.o libxc_la-hyb_mgga_xc_m05.o libxc_la-xc_f.o libxc_la-libxc_funcs.o libxc_la-libxc.o
:info:build /opt/local/bin/ranlib: file: .libs/libxc.a(libxc_la-libxc_funcs.o) has no symbols
:info:build /opt/local/bin/ranlib: file: .libs/libxc.a(libxc_la-libxc.o) has no symbols
:info:build libtool: link: ranlib .libs/libxc.a
:info:build ranlib: file: .libs/libxc.a(libxc_la-libxc_funcs.o) has no symbols
:info:build ranlib: file: .libs/libxc.a(libxc_la-libxc.o) has no symbols
:info:build libtool: link: ( cd ".libs" && rm -f "libxc.la" && ln -s "../libxc.la" "libxc.la" )
:info:build make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1/src'
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1/src'
:info:build Making all in testsuite
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1/testsuite'
:info:build /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..  -I./../src/ -I../src -I/opt/local/include  -O2 -m64 -MT xc_get_data-xc-get_data.o -MD -MP -MF .deps/xc_get_data-xc-get_data.Tpo -c -o xc_get_data-xc-get_data.o `test -f 'xc-get_data.c' || echo './'`xc-get_data.c
:info:build mv -f .deps/xc_get_data-xc-get_data.Tpo .deps/xc_get_data-xc-get_data.Po
:info:build /bin/sh ../libtool --tag=CC   --mode=link /opt/local/bin/gcc-mp-4.7  -O2 -m64  -L/opt/local/lib -o xc-get_data xc_get_data-xc-get_data.o -L../src/ -lxc -lm 
:info:build libtool: link: /opt/local/bin/gcc-mp-4.7 -O2 -m64 -o xc-get_data xc_get_data-xc-get_data.o  -L/opt/local/lib -L../src/ /opt/local/lib/libxc.dylib -lm
:info:build /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..  -I./../src/ -I../src -I/opt/local/include  -O2 -m64 -MT xc_consistency-xc-consistency.o -MD -MP -MF .deps/xc_consistency-xc-consistency.Tpo -c -o xc_consistency-xc-consistency.o `test -f 'xc-consistency.c' || echo './'`xc-consistency.c
:info:build mv -f .deps/xc_consistency-xc-consistency.Tpo .deps/xc_consistency-xc-consistency.Po
:info:build /bin/sh ../libtool --tag=CC   --mode=link /opt/local/bin/gcc-mp-4.7  -O2 -m64  -L/opt/local/lib -o xc-consistency xc_consistency-xc-consistency.o -L../src/ -lxc -lm 
:info:build libtool: link: /opt/local/bin/gcc-mp-4.7 -O2 -m64 -o xc-consistency xc_consistency-xc-consistency.o  -L/opt/local/lib -L../src/ /opt/local/lib/libxc.dylib -lm
:info:build /opt/local/bin/gcc-mp-4.7 -DHAVE_CONFIG_H -I. -I..  -I./../src/ -I../src -I/opt/local/include  -O2 -m64 -MT xc_regression-xc-regression.o -MD -MP -MF .deps/xc_regression-xc-regression.Tpo -c -o xc_regression-xc-regression.o `test -f 'xc-regression.c' || echo './'`xc-regression.c
:info:build mv -f .deps/xc_regression-xc-regression.Tpo .deps/xc_regression-xc-regression.Po
:info:build /bin/sh ../libtool --tag=CC   --mode=link /opt/local/bin/gcc-mp-4.7  -O2 -m64  -L/opt/local/lib -o xc-regression xc_regression-xc-regression.o -L../src/ -lxc -lm 
:info:build libtool: link: /opt/local/bin/gcc-mp-4.7 -O2 -m64 -o xc-regression xc_regression-xc-regression.o  -L/opt/local/lib -L../src/ /opt/local/lib/libxc.dylib -lm
:info:build Undefined symbols for architecture x86_64:
:info:build   "_xc_functional_get_number", referenced from:
:info:build       _main in xc_regression-xc-regression.o
:info:build ld: symbol(s) not found for architecture x86_64
:info:build collect2: error: ld returned 1 exit status
:info:build make[2]: *** [xc-regression] Error 1
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1/testsuite'
:info:build make[1]: *** [all-recursive] Error 1
:info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1'
:info:build make: *** [all] Error 2
:info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1'
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/work/libxc-2.0.1" && /usr/bin/make -w all 
:info:build Exit code: 2
:error:build org.macports.build for port libxc returned: command execution failed
:debug:build Error code: CHILDSTATUS 98485 2
:debug:build Backtrace: command execution failed
    while executing
"system -nice 0 $fullcmdstring"
    ("eval" body line 1)
    invoked from within
"eval system $notty $nice \$fullcmdstring"
    invoked from within
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"$procedure $targetname"
:info:build Warning: targets not executed for libxc: org.macports.install org.macports.build org.macports.destroot
:notice:build Please see the log file for port libxc for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_libxc/libxc/main.log

[larryv (Lawrence Velázquez)]

Thanks for the ticket. In the future, please Cc relevant port maintainers and provide log output as a file attachment instead of pasting it directly.

[dstrubbe (David Strubbe)]

Installation from scratch of libxc @2.0.1_0 +gcc47 worked fine for me. OSX 10.8.3, XCode 4.6.2.

[dstrubbe (David Strubbe)]

This ticket should be closed as "worksforme".