#39072 closed defect (fixed)
SuiteSparse @4.1.0_0+atlas: destroot fails with undefined symbol "_dgemm_" for x86_64
| Reported by: | olivier@… | Owned by: | macports-tickets@… |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.1.3 |
| Keywords: | Cc: | joseph.e.riedel@…, gabriel.ben.jamin@…, aarakes@…, michaelld (Michael Dickens) | |
| Port: | SuiteSparse |
Description (last modified by mf2k (Frank Schima))
I'm trying to install octave (sudo port install octave-devel +atlas+docs), but i keep getting a failure when processing SuiteParse. I'm new to this so i did a quick search in the tickets, but could not find anything that look close.
:debug:destroot Executing proc-post-org.macports.destroot-destroot-0 :info:destroot Undefined symbols for architecture x86_64: :info:destroot "_dgemm_"
and a lot more in the logs
Attachments (2)
Change History (13)
Changed 12 years ago by olivier@…
comment:1 Changed 12 years ago by mf2k (Frank Schima)
| Description: | modified (diff) |
|---|---|
| Port: | SuiteSparse added; SuiteParse removed |
| Summary: | installing octave fails on suiteparse with undefined symbol for architecture → SuiteSparse build fails with undefined symbol for architecture |
In the future, please use WikiFormatting.
comment:2 Changed 11 years ago by larryv (Lawrence Velázquez)
| Cc: | joseph.e.riedel@… added |
|---|---|
| Summary: | SuiteSparse build fails with undefined symbol for architecture → SuiteSparse @4.1.0_0+atlas: destroot fails with undefined symbol "_dgemm_" for x86_64 |
Has duplicate #40197.
Changed 11 years ago by gabriel.ben.jamin@…
| Attachment: | main.2.log added |
|---|
comment:3 Changed 11 years ago by gabriel.ben.jamin@…
Had the same error. Log attached. Looks marginally different, remove if otherwise.
comment:5 Changed 10 years ago by ryandesign (Ryan Carsten Schmidt)
| Cc: | aarakes@… added |
|---|
Has duplicate #45728.
comment:7 Changed 10 years ago by michaelld (Michael Dickens)
I don't see this issue on SuiteSparse 4.2.1, Xcode 6.1.0, OSX 10.9:
For anyone still having issues; please do:
sudo port clean SuiteSparse sudo port selfupdate sudo port install SuiteSparse +atlas
If this issue still happens, then just post back that it's still an issue & also include the output from the following commands:
port installed atlas nm -a /opt/local/lib/libtatlas.dylib | grep ztrsm
comment:8 Changed 10 years ago by seanfarley (Sean Farley)
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
Just tested this as well and it works for me so I'm closing this as fixed.
comment:9 Changed 10 years ago by macports.org@…
Just tried on OSX 10.9.5, Xcode 6.1.1, and getting the same error.
I tried the steps above (clean/selfupdate/install)
---> Staging SuiteSparse into destroot Error: org.macports.destroot for port SuiteSparse returned: command execution failed
In the log file:
:info:destroot Undefined symbols for architecture x86_64: :info:destroot "_dgemm_", referenced from:
Here's the info requested...
$ port installed atlas The following ports are currently installed: atlas @3.10.2_1+clang+nofortran (active) $ nm -a /opt/local/lib/libtatlas.dylib | grep ztrsm 000000000038f920 T _ATL_ztrsm 0000000000300a30 T _ATL_ztrsmKL_rk2 00000000003042d0 T _ATL_ztrsmKR_rk2 000000000040bb90 s _ATL_ztrsmKR_rk2.one 000000000038fcf0 T _ATL_ztrsmLLCN 000000000038fda0 T _ATL_ztrsmLLCU 000000000038fe50 T _ATL_ztrsmLLNN 000000000038ff00 T _ATL_ztrsmLLNU 000000000038ffb0 T _ATL_ztrsmLLTN 0000000000390060 T _ATL_ztrsmLLTU 0000000000390110 T _ATL_ztrsmLUCN 00000000003901c0 T _ATL_ztrsmLUCU 0000000000390270 T _ATL_ztrsmLUNN 0000000000390320 T _ATL_ztrsmLUNU 00000000003903d0 T _ATL_ztrsmLUTN 0000000000390480 T _ATL_ztrsmLUTU 0000000000390530 T _ATL_ztrsmRLCN 00000000003905e0 T _ATL_ztrsmRLCU 0000000000390690 T _ATL_ztrsmRLNN 0000000000390740 T _ATL_ztrsmRLNU 00000000003907f0 T _ATL_ztrsmRLTN 00000000003908a0 T _ATL_ztrsmRLTU 0000000000390950 T _ATL_ztrsmRUCN 0000000000390a00 T _ATL_ztrsmRUCU 0000000000390ab0 T _ATL_ztrsmRUNN 0000000000390b60 T _ATL_ztrsmRUNU 0000000000390c10 T _ATL_ztrsmRUTN 0000000000390cc0 T _ATL_ztrsmRUTU 0000000000404310 T _cblas_ztrsm
Any help appreciated!
comment:10 Changed 10 years ago by seanfarley (Sean Farley)
Try installing atlas without the +nofortran version.
comment:11 Changed 10 years ago by michaelld (Michael Dickens)
I added in a check to SuiteSparse to look for the +nofortran variant and error out if it is found. Hence, this ticket's issue has actually been fixed. For those having it, please do:
sudo port clean suitesparse atlas sudo port selfupdate sudo port install atlas sudo port install suitesparse +atlas
and hopefully the above will now work.
main.log