py26-scipy 0.12.0_2 command execution failed

[alain.billoire@…]

Update from 0.11.0_0 to 0.12.0_2 on OSX Mac OS X 10.6.8 (10K549) fails with message

Error: org.macports.build for port py26-scipy returned: command execution failed

[ryandesign (Ryan Carsten Schmidt)]

Could you please ​clean and try again? This was not a clean build.

[alain.billoire@…]

log file for port py26-scipy

[alain.billoire@…]

Replying to ryandesign@…:

Could you please ​clean and try again? This was not a clean build.

I typed sudo port clean --all installed sudo port -f uninstall inactive

and then

sudo port upgrade --enforce-variants installed

and got the same error message

Error: org.macports.build for port py26-scipy returned: command execution failed

[mf2k (Frank Schima)]

The error is actually in your numpy port. This is a duplicate of #37415.

:info:build Traceback (most recent call last):
:info:build   File "setup.py", line 165, in <module>
:info:build     setup_package()
:info:build   File "setup.py", line 145, in setup_package
:info:build     from numpy.distutils.core import setup
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/__init__.py", line 137, in <module>
:info:build     import add_newdocs
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/add_newdocs.py", line 9, in <module>
:info:build     from numpy.lib import add_newdoc
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/lib/__init__.py", line 13, in <module>
:info:build     from polynomial import *
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/lib/polynomial.py", line 17, in <module>
:info:build     from numpy.linalg import eigvals, lstsq, inv
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/linalg/__init__.py", line 48, in <module>
:info:build     from linalg import *
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/linalg/linalg.py", line 23, in <module>
:info:build     from numpy.linalg import lapack_lite
:info:build ImportError: dlopen(/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/linalg/lapack_lite.so, 2): Symbol not found: _omp_get_num_threads
:info:build   Referenced from: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/linalg/lapack_lite.so
:info:build   Expected in: flat namespace
:info:build  in /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/linalg/lapack_lite.so
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py-scipy/py26-scipy/work/scipy-0.12.0" && /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/local/bin/gfortran-mp-4.4 --f90exec /opt/local/bin/gfortran-mp-4.4 config --cc /opt/local/bin/gcc-mp-4.4 --include-dirs /opt/local/include --library-dirs /opt/local/lib build