Opened 11 years ago
Closed 6 years ago
#43306 closed defect (fixed)
clustalx @2.1: error: implicit instantiation of undefined template 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >'
Reported by: | pst@… | Owned by: | nerdling (Jeremy Lavergne) |
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Priority: | Normal | Milestone: | |
Component: | ports | Version: | 2.2.1 |
Keywords: | Cc: | ||
Port: | clustalx |
Description (last modified by ryandesign (Ryan Carsten Schmidt))
I have a fresh install of macports. I did "sudo port install clustalx", got:
Error: org.macports.build for port clustalx returned: command execution failed Please see the log file for port clustalx for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_clustalx/clustalx/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port clustalx failed
Log attached.
Attachments (1)
Change History (5)
Changed 11 years ago by pst@…
comment:1 Changed 11 years ago by ryandesign (Ryan Carsten Schmidt)
Description: | modified (diff) |
---|---|
Owner: | changed from macports-tickets@… to snc@… |
Port: | clustalx added |
Summary: | clustalx 2.1, build error → clustalx @2.1: error: implicit instantiation of undefined template 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >' |
The first error in the log seems to be:
:info:build In file included from clustalW/general/VectorOutOfRange.cpp:9: :info:build clustalW/general/VectorOutOfRange.h:23:21: error: implicit instantiation of undefined template 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >' :info:build std::string _name; :info:build ^ :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iosfwd:188:33: note: template is declared here :info:build class _LIBCPP_TYPE_VIS_ONLY basic_string; :info:build ^
comment:2 Changed 9 years ago by nerdling (Jeremy Lavergne)
Status: | new → assigned |
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comment:3 Changed 9 years ago by nerdling (Jeremy Lavergne)
After blacklisting clang/llvm, using MacPorts' apple-gcc-4.2 compiler got me to:
make: *** [AlignmentParameters.o] Segmentation fault: 11
comment:4 Changed 6 years ago by ryandesign (Ryan Carsten Schmidt)
Resolution: | → fixed |
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Status: | assigned → closed |
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Build error log for clustalx