ncarg @6.2.0 +gcc48 Error on Build in ctrans, itrans, rasstat, rasls, rascal, rasps, rasgetpal & ras2ccir601 : hcomp and cszip compression errors on compile

[William.Capehart@…]

On building NCL/NCARG 6.2.0 there is an error that seems to be linked to the compression libraries which are an essential part of NCL if you want to tackle the primary data formats with which we are expected to work (e.g, GRIB2 and netCDF)

Log is attached

Sample Errors (it seems to involve cszip.o & hcomp.o in libdf.a

:info:build make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/ncl_ncarg-6.2.0/ncarview/src/lib/libictrans'
:info:build make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/ncl_ncarg-6.2.0/ncarview/src/lib'
:info:build Making ./ncarview/src/bin
:info:build make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/ncl_ncarg-6.2.0/ncarview/src/bin'
:info:build Making ./ncarview/src/bin/ctrans
:info:build make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/ncl_ncarg-6.2.0/ncarview/src/bin/ctrans'
:info:build /opt/local/bin/gcc-mp-4.8 -fPIC -ansi -D_DARWIN_C_SOURCE  -Os  -I../../../.././include -I/opt/local/include/freetype2 -I/opt/local/include/udunits2 -I/opt/local/lib/hdfeos5/include -I/opt/local/include    -DSYSV -D_XOPEN_SOURCE -DByteSwapped -D__UNIXOS2__ -D__JIRA1530__ -DNeedFuncProto    -c -o main.o main.c
:info:build /opt/local/bin/gcc-mp-4.8 -fPIC -ansi -D_DARWIN_C_SOURCE  -Os    -o ctrans main.o ../../../.././ncarview/src/lib/libctrans/libctrans.o -L../../../.././ncarview/src/lib/libcgm -lcgm -L../../../.././ncarview/src/lib/libncarg_ras -lncarg_ras -L../../../.././common/src/libncarg_c -lncarg_c -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/destroot/opt/local/lib -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/ncl_ncarg-6.2.0 -L/opt/local/lib -L/opt/local/lib/hdfeos5/lib -L/opt/local/lib -lXpm -lX11 -lXext   -lmfhdf -ldf -ljpeg -lz -lm   
:info:build ld: warning: directory not found for option '-L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/destroot/opt/local/lib'
:info:build Undefined symbols for architecture x86_64:
:info:build   "_SZ_BufftoBuffDecompress", referenced from:
:info:build       _HCIcszip_decode in libdf.a(cszip.o)
:info:build   "_SZ_encoder_enabled", referenced from:
:info:build       _HCIinit_coder in libdf.a(hcomp.o)
:info:build       _HCget_config_info in libdf.a(hcomp.o)
:info:build ld: symbol(s) not found for architecture x86_64
:info:build collect2: error: ld returned 1 exit status
:info:build make[5]: *** [ctrans] Error 1

[William.Capehart@…]

Log File : /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/main.log

[massonseb]

Cc Me!

[massonseb]

I have the same error that seems to be related to the use of the variant +szip in hdf5-18, hdfeos and hdfeos5.
I also have another error that seams to be related to the use on the +openmpi variant of hdf5-18:

:info:build In file included from /opt/local/include/hdf5.h:24:0,
:info:build                  from FileSupport.c:37:
:info:build /opt/local/include/H5public.h:61:20: fatal error: mpi.h: No such file or directory
:info:build  #   include <mpi.h>
:info:build                     ^
:info:build compilation terminated.
:info:build make[5]: *** [FileSupport.o] Error 1

I attach my main.log file.

[petrrr]

Cc Me!

[tenomoto (Takeshi Enomoto)]

Sorry for extremely slow response. It seems that this is a hdf4 problem. Are szip and hdf4 +szip built correctly? What is the output of the following? ${prefix} is usually /opt/local

otool -L ${prefix}/lib/libdf.dylib

I fixed the problem when hdf5 is installed with a MPI variant in r124290. I hope this helps.

[massonseb]

It works for me. I have been able to install ncarg @6.2.0_0+gcc48+openmpi
thank you so much. Seb

[tenomoto (Takeshi Enomoto)]

Close the ticket for now. Reopen or file a new if you see a problem.