Prokka fails to build (some macports were used for the dependencies)

[hobbsilla]

I attempted to build my prokka database and get this abort message. Could someone help me figure out based on the provide output from my terminal where I could find a more detailed log that I could attach to this ticket? I used CPAN to install Bioperl. I believe cpanminus is in the macports but I'm not sure if I managed to install CPAN from elsewhere. I have ncbi_tools macports installed plus the blast+ through the source code just to cover my bases. I install GNU Parallel through the Macports. All of the other dependencies I installed from source code (HMMER, Aragorn, Prodigal and Infernal). Any help would be greatly appreciated.

$ prokka --setupdb
Can't locate XML/Simple.pm in @INC (@INC contains: /opt/local/lib/perl5/site_perl/5.12.5/darwin-thread-multi-2level /opt/local/lib/perl5/site_perl/5.12.5 /opt/local/lib/perl5/vendor_perl/5.12.5/darwin-thread-multi-2level /opt/local/lib/perl5/vendor_perl/5.12.5 /opt/local/lib/perl5/5.12.5/darwin-thread-multi-2level /opt/local/lib/perl5/5.12.5 /opt/local/lib/perl5/site_perl /opt/local/lib/perl5/vendor_perl/5.12.4/darwin-thread-multi-2level /opt/local/lib/perl5/vendor_perl/5.12.4 /opt/local/lib/perl5/vendor_perl .) at /Users/elixir/Documents/Programming_Folder/bioinfo/prokka-1.10/bin/prokka line 25.

[larryv (Lawrence Velázquez)]

There doesn’t seem to be any MacPorts problem here, so I’m going to close this ticket. I’ll forward your query to the macports-users mailing list, and hopefully someone there can help you out.