Opened 10 years ago
Closed 10 years ago
#46218 closed update (fixed)
pymol-1.7.4.0 update
Reported by: | howarth.at.macports@… | Owned by: | ryandesign (Ryan Carsten Schmidt) |
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Priority: | Normal | Milestone: | |
Component: | ports | Version: | 2.3.3 |
Keywords: | maintainer haspatch | Cc: | |
Port: | pymol |
Description (last modified by ryandesign (Ryan Carsten Schmidt))
The attached Portfile.diff, new pymol-use-glkit.diff patch and revised files for the existing setup_py.diff, pmg_tk_platform.patch and pymol-clang.diff patches updates the package to the 1.7.4.0 release at the svn r4106 commit The changes include...
- Dropping the deprecated apbs_tkinter.patch for tk/tcl 8.6 support which is now committed upstream.
- Addition of the pymol-use-glkit.diff patch for darwin12 or later to avoid the use of the deprecated gluPerspective() call. Note that Apple has yet to provide a replacement function for the deprecated gluErrorString() call.
- Fix current dest-root failure by commenting out self.make_launch_script() in setup.py in the setup_py.diff patch to prevent the upstream pymol launcher script from being installed at ${destroot}${prefix}/bin/pymol.
Attachments (5)
Change History (10)
Changed 10 years ago by howarth.at.macports@…
Attachment: | pymol-use-glkit.diff added |
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Changed 10 years ago by howarth.at.macports@…
Attachment: | pmg_tk_platform.patch added |
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revised pmg_tk_platform.patch patch
comment:1 Changed 10 years ago by howarth.at.macports@…
Note that with latest Portfile.diff based on r4107 both the apbs_tkinter.patch and pymol-clang.diff patches can be removed from the files subdirectory of the pymol packaging.
comment:2 Changed 10 years ago by ryandesign (Ryan Carsten Schmidt)
Description: | modified (diff) |
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Keywords: | maintainer haspatch added |
comment:3 follow-up: 4 Changed 10 years ago by ryandesign (Ryan Carsten Schmidt)
Owner: | changed from macports-tickets@… to ryandesign@… |
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Status: | new → assigned |
I fixed the destroot failure a different way; see comment:ticket:45401:20 for an explanation of why it was happening. Would you like to keep the launcher script, or remove it as in your patches here?
comment:4 Changed 10 years ago by howarth.at.macports@…
Replying to ryandesign@…:
I fixed the destroot failure a different way; see comment:ticket:45401:20 for an explanation of why it was happening. Would you like to keep the launcher script, or remove it as in your patches here?
No. We should use the customized launcher script installed by the pymol_shell.diff patch instead. Please use the packaging posted here.
Changed 10 years ago by howarth.at.macports@…
Attachment: | Portfile.diff added |
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revised Portfile diff against 1.7.1.1-2
Changed 10 years ago by howarth.at.macports@…
Attachment: | setup_py.diff added |
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revised setup_py.diff
Changed 10 years ago by howarth.at.macports@…
Attachment: | pymol-clang.diff added |
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add back pymol-clang.diff to remove some unused variables
comment:5 Changed 10 years ago by ryandesign (Ryan Carsten Schmidt)
Resolution: | → fixed |
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Status: | assigned → closed |
new pymol-use-glkit.diff patch