stimfit @0.14.1: update 0.14.2

[neurodroid (Christoph Schmidt-Hieber)]

• Fixes some errors during event detection

See related ticket #46932

[neurodroid (Christoph Schmidt-Hieber)]

stimfit Portfile patch

[petrrr]

Cc Me!

[mojca (Mojca Miklavec)]

For some reason the compilation fails for me:

  CXX      libstimfit_la-app.lo
In file included from ./gui/app.cpp:51:
./gui/./app.h:207:10: fatal error: 'wx/wxPython/wxPython.h' file not found
#include <wx/wxPython/wxPython.h>
         ^
1 error generated.
make[3]: *** [libstimfit_la-app.lo] Error 1
make[3]: *** Waiting for unfinished jobs....

I wanted to diagnose the problem, but when I cd inside and run sudo make V=1, it fails with another error:

> sudo make V=1
make  all-recursive
Making all in src
Making all in libstfio
make[3]: Nothing to be done for `all'.
Making all in libstfnum
make[3]: Nothing to be done for `all'.
Making all in stimfit
/bin/sh ../../libtool  --tag=CXX   --mode=compile /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I../.. -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7  -DWITH_PYTHON -DHAVE_LAPACK -DHAVE_LAPACK_SUFFIX -DH5_USE_16_API -O2 -g -I/opt/local/Library/Frameworks/wxWidgets.framework/Versions/wxPython/3.0/lib/wx/include/osx_cocoa-unicode-3.0 -I/opt/local/Library/Frameworks/wxWidgets.framework/Versions/wxPython/3.0/include/wx-3.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXMAC__ -D__WXOSX__ -D__WXOSX_COCOA__  -pipe -Os -arch x86_64 -stdlib=libstdc++ -fPIC  -Wall -c -o libstimfit_la-app.lo `test -f './gui/app.cpp' || echo './'`./gui/app.cpp
libtool: compile:  /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I../.. -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -DWITH_PYTHON -DHAVE_LAPACK -DHAVE_LAPACK_SUFFIX -DH5_USE_16_API -O2 -g -I/opt/local/Library/Frameworks/wxWidgets.framework/Versions/wxPython/3.0/lib/wx/include/osx_cocoa-unicode-3.0 -I/opt/local/Library/Frameworks/wxWidgets.framework/Versions/wxPython/3.0/include/wx-3.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXMAC__ -D__WXOSX__ -D__WXOSX_COCOA__ -pipe -Os -arch x86_64 -stdlib=libstdc++ -fPIC -Wall -c ./gui/app.cpp  -fno-common -DPIC -o .libs/libstimfit_la-app.o
In file included from ./gui/app.cpp:51:
In file included from ./gui/./app.h:176:
./gui/./../stf.h:27:10: fatal error: 'boost/function.hpp' file not found
#include <boost/function.hpp>
         ^
1 error generated.
make[3]: *** [libstimfit_la-app.lo] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

I'm a bit confused.

[mojca (Mojca Miklavec)]

Cc Me!

[neurodroid (Christoph Schmidt-Hieber)]

I'll look into this. It would make sense to update directly to v0.14.5 at the same time. For this we'd need libbiosig to be updated to v1.6.3 so that we can use the biosig variant. See #47029.

[mojca (Mojca Miklavec)]

I believe that r129094 (or rather: the previous update) was the culprit. I increased the revision of wxPython-3.0 in r133530, but I didn't test it yet.

[mojca (Mojca Miklavec)]

Indeed. It works now. I also tried to compile version 0.14.5debian with +libbiosig and the latest version of the library and it was successful.

(I find it weird that the domain name jumps to google code where you neither have the source code nor the downloads up to date.)

If you have time, please also take a look at the output of port -v build stimfit. It throws a number of different compiler warnings.

I would suggest to make any kind of change soon. I'm not sure if the port is still functional after I upgraded biosig.

[neurodroid (Christoph Schmidt-Hieber)]

stimfit Portfile patch

[neurodroid (Christoph Schmidt-Hieber)]

Updated patch attached (v0.14.5), better handling of libbiosig errors

[mojca (Mojca Miklavec)]

Committed in r133540 with two other trivial patches.