Shogun installation failed

[mariano.avino@…]

Hi there. I am quite new in computer science. I am trying to instal shogun on Mac. I have tried in two ways and both failed. In the first one I did it from Source but when I configure it it fails telling that: Checking for SWIG ... 3.0.5 ... too old version 1.3.29 or later required

Error: swig outdated

Then I tried to install it through: sudo port install shogun and the attached file saying that it failed again.

Could you please help me. Thanks a lot in advance.

[mf2k (Frank Schima)]

The Priority and Milestone fields are for use by Macports team members only.

[mariano.avino@…]

Sorry about that The Priority and Milestone's misusage.

[mf2k (Frank Schima)]

Thanks. Also next time please fill in the Port field and Cc the port maintainers (port info --maintainers shogun), if any.

The log says it all:

:info:configure Checking for C Compiler ...
:info:configure Error: no C compiler detected - cannot do anything

You do not have the ​Xcode command line tools installed. Do that and then clean the port and try again.

[mariano.avino@…]

Thanks for the help. Sorry if I did not fill in the Port filed and Cc the port maintainers. I installed the Xcode command line tools and cleaned the port. I installed again MacPorts and then I ran these commands again: sudo port selfupdate

sudo port install swig -php5 -ruby -perl +python +octave +r

sudo port install shogun

Unfortunately the process of installing shogun still fails. I got this log file now:

version:1 :debug:main epoch: in tree: 0 installed: 0 :debug:main pkgconfig 0.28_0 exists in the ports tree :debug:main pkgconfig 0.28_0 is the latest installed :debug:main pkgconfig 0.28_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/pkgconfig :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! pkgconfig 0.28_0 >= pkgconfig 0.28_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main libiconv 1.14_0 exists in the ports tree :debug:main libiconv 1.14_0 is the latest installed :debug:main libiconv 1.14_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0 :debug:main epoch: in tree: 2 installed: 2 :debug:main gcc48 4.8.4_0 exists in the ports tree :debug:main gcc48 4.8.4_0 is the latest installed :debug:main gcc48 4.8.4_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc48 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler llvm-gcc-4.2 blacklisted because it's not installed or it doesn't work :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gcc48 4.8.4_0 >= gcc48 4.8.4_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main cctools 862_1 exists in the ports tree :debug:main cctools 862_1 +llvm35 is the latest installed :debug:main cctools 862_1 +llvm35 is active :debug:main Merging existing variants '+llvm35' into variants :debug:main new fully merged portvariants: llvm35 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant llvm35 provides llvm35 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! cctools 862_1 >= cctools 862_1 :debug:main epoch: in tree: 1 installed: 1 :debug:main llvm-3.5 3.5.1_3 exists in the ports tree :debug:main llvm-3.5 3.5.1_3 is the latest installed :debug:main llvm-3.5 3.5.1_3 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.5 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler clang 600.0.57 not blacklisted because it doesn't match {clang < 425.0.24} :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! llvm-3.5 3.5.1_3 >= llvm-3.5 3.5.1_3 :debug:main epoch: in tree: 20090923 installed: 20090923 :debug:main libedit 20140620-3.1_0 exists in the ports tree :debug:main libedit 20140620-3.1_0 is the latest installed :debug:main libedit 20140620-3.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libedit 20140620-3.1_0 >= libedit 20140620-3.1_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main ncurses 5.9_2 exists in the ports tree :debug:main ncurses 5.9_2 is the latest installed :debug:main ncurses 5.9_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main libffi 3.2.1_0 exists in the ports tree :debug:main libffi 3.2.1_0 is the latest installed :debug:main libffi 3.2.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libffi 3.2.1_0 >= libffi 3.2.1_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main zlib 1.2.8_0 exists in the ports tree :debug:main zlib 1.2.8_0 is the latest installed :debug:main zlib 1.2.8_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0 :debug:main epoch: in tree: 1 installed: 1 :debug:main libcxx 3.6.0_0 exists in the ports tree :debug:main libcxx 3.6.0_0 is the latest installed :debug:main libcxx 3.6.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/libcxx :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libcxx 3.6.0_0 >= libcxx 3.6.0_0 :debug:main Found Dependency: path: /usr/bin filename: perl regex: ^{perl$ :debug:main perl5 is *not* installed by MacPorts :debug:main Searching for dependency: perl5 :debug:main Didn't find receipt, going to depspec regex for: perl5 :debug:main Found Dependency: path: /usr/bin filename: perl regex:} perl$ :debug:main perl5 not installed, soft dependency satisfied :debug:main epoch: in tree: 0 installed: 0 :debug:main llvm_select 1.0_0 exists in the ports tree :debug:main llvm_select 1.0_0 is the latest installed :debug:main llvm_select 1.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! llvm_select 1.0_0 >= llvm_select 1.0_0 :debug:main epoch: in tree: 1 installed: 1 :debug:main cloog 0.18.2_2 exists in the ports tree :debug:main cloog 0.18.2_2 is the latest installed :debug:main cloog 0.18.2_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cloog :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! cloog 0.18.2_2 >= cloog 0.18.2_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main gmp 6.0.0_1 exists in the ports tree :debug:main gmp 6.0.0_1 is the latest installed :debug:main gmp 6.0.0_1 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gmp :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gmp 6.0.0_1 >= gmp 6.0.0_1 :debug:main epoch: in tree: 2 installed: 2 :debug:main isl 0.14_2 exists in the ports tree :debug:main isl 0.14_2 is the latest installed :debug:main isl 0.14_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/isl :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! isl 0.14_2 >= isl 0.14_2 :debug:main epoch: in tree: 2 installed: 2 :debug:main ld64 2_0 exists in the ports tree :debug:main ld64 2_0 is the latest installed :debug:main ld64 2_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ld64 2_0 >= ld64 2_0 :debug:main epoch: in tree: 2 installed: 2 :debug:main ld64-latest 236.3_1 exists in the ports tree :debug:main ld64-latest 236.3_1 +llvm35 is the latest installed :debug:main ld64-latest 236.3_1 +llvm35 is active :debug:main Merging existing variants '+llvm35' into variants :debug:main new fully merged portvariants: llvm35 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler clang 600.0.57 not blacklisted because it doesn't match {clang < 100} :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant llvm35 provides llvm35 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ld64-latest 236.3_1 >= ld64-latest 236.3_1 :debug:main epoch: in tree: 2 installed: 2 :debug:main libgcc 4.9.2_1 exists in the ports tree :debug:main libgcc 4.9.2_1 is the latest installed :debug:main libgcc 4.9.2_1 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc49 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler llvm-gcc-4.2 blacklisted because it's not installed or it doesn't work :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libgcc 4.9.2_1 >= libgcc 4.9.2_1 :debug:main epoch: in tree: 0 installed: 0 :debug:main libmpc 1.0.3_0 exists in the ports tree :debug:main libmpc 1.0.3_0 is the latest installed :debug:main libmpc 1.0.3_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libmpc :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libmpc 1.0.3_0 >= libmpc 1.0.3_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main mpfr 3.1.2-p10_3 exists in the ports tree :debug:main mpfr 3.1.2-p10_3 is the latest installed :debug:main mpfr 3.1.2-p10_3 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/mpfr :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler clang 600.0.57 not blacklisted because it doesn't match {clang == 211.10.1} :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! mpfr 3.1.2-p10_3 >= mpfr 3.1.2-p10_3 :debug:main epoch: in tree: 0 installed: 0 :debug:main gcc_select 0.1_8 exists in the ports tree :debug:main gcc_select 0.1_8 is the latest installed :debug:main gcc_select 0.1_8 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/gcc_select :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gcc_select 0.1_8 >= gcc_select 0.1_8 :debug:main epoch: in tree: 0 installed: 0 :debug:main hdf5 1.8.14_0 exists in the ports tree :debug:main hdf5 1.8.14_0 +cxx is the latest installed :debug:main hdf5 1.8.14_0 +cxx is active :debug:main Merging existing variants '+cxx' into variants :debug:main new fully merged portvariants: cxx + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl :debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl :debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant cxx provides cxx :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! hdf5 1.8.14_0 >= hdf5 1.8.14_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main json-c 0.12-20140410_0 exists in the ports tree :debug:main json-c 0.12-20140410_0 is the latest installed :debug:main json-c 0.12-20140410_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/json-c :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! json-c 0.12-20140410_0 >= json-c 0.12-20140410_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main libxml2 2.9.2_2 exists in the ports tree :debug:main libxml2 2.9.2_2 is the latest installed :debug:main libxml2 2.9.2_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libxml2 2.9.2_2 >= libxml2 2.9.2_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main xz 5.2.1_0 exists in the ports tree :debug:main xz 5.2.1_0 is the latest installed :debug:main xz 5.2.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! xz 5.2.1_0 >= xz 5.2.1_0 :debug:main epoch: in tree: 2 installed: 2 :debug:main gettext 0.19.4_0 exists in the ports tree :debug:main gettext 0.19.4_0 is the latest installed :debug:main gettext 0.19.4_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main compiler clang 600.0.57 not blacklisted because it doesn't match {clang < 211.10.1} :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gettext 0.19.4_0 >= gettext 0.19.4_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main expat 2.1.0_0 exists in the ports tree :debug:main expat 2.1.0_0 is the latest installed :debug:main expat 2.1.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main readline 6.3.003_0 exists in the ports tree :debug:main readline 6.3.003_0 is the latest installed :debug:main readline 6.3.003_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/readline :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! readline 6.3.003_0 >= readline 6.3.003_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main atlas 3.10.2_1 exists in the ports tree :debug:main atlas 3.10.2_1 +gcc48 is the latest installed :debug:main atlas 3.10.2_1 +gcc48 is active :debug:main Merging existing variants '+gcc48' into variants :debug:main new fully merged portvariants: gcc48 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/atlas :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant gcc48 provides gcc48 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Chosen compiler macports-gcc-4.8 is provided by a port, adding dependency :debug:main Adding depends_lib port:gcc48 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! atlas 3.10.2_1 >= atlas 3.10.2_1 :debug:main epoch: in tree: 0 installed: 0 :debug:main arpack 3.1.5_0 exists in the ports tree :debug:main arpack 3.1.5_0 +accelerate+gfortran is the latest installed :debug:main arpack 3.1.5_0 +accelerate+gfortran is active :debug:main Merging existing variants '+accelerate+gfortran' into variants :debug:main new fully merged portvariants: accelerate + gfortran + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/arpack :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl :debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl :debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant gfortran provides gfortran :debug:main Executing variant accelerate provides accelerate :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! arpack 3.1.5_0 >= arpack 3.1.5_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main eigen3 3.2.4_0 exists in the ports tree :debug:main eigen3 3.2.4_0 is the latest installed :debug:main eigen3 3.2.4_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/eigen3 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl :debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl :debug:main Re-registering default for configure.dir :debug:main Re-registering default for build.dir :debug:main Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl :debug:main only one arch supported, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! eigen3 3.2.4_0 >= eigen3 3.2.4_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main lp_solve 5.5.2.0_0 exists in the ports tree :debug:main lp_solve 5.5.2.0_0 is the latest installed :debug:main lp_solve 5.5.2.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/lp_solve :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! lp_solve 5.5.2.0_0 >= lp_solve 5.5.2.0_0 :debug:main epoch: in tree: 1 installed: 1 :debug:main glpk 4.48_0 exists in the ports tree :debug:main glpk 4.48_0 is the latest installed :debug:main glpk 4.48_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/glpk :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup archcheck 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/archcheck-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! glpk 4.48_0 >= glpk 4.48_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main lzo2 2.09_0 exists in the ports tree :debug:main lzo2 2.09_0 is the latest installed :debug:main lzo2 2.09_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/lzo2 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! lzo2 2.09_0 >= lzo2 2.09_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main snappy 1.1.1_0 exists in the ports tree :debug:main snappy 1.1.1_0 is the latest installed :debug:main snappy 1.1.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/snappy :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! snappy 1.1.1_0 >= snappy 1.1.1_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main gzip 1.6_0 exists in the ports tree :debug:main gzip 1.6_0 is the latest installed :debug:main gzip 1.6_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/gzip :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gzip 1.6_0 >= gzip 1.6_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main bzip2 1.0.6_0 exists in the ports tree :debug:main bzip2 1.0.6_0 is the latest installed :debug:main bzip2 1.0.6_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0 :msg:main ---> Computing dependencies for shogun:info:main .:debug:main Checking for conflicts against shogun :debug:main Searching for dependency: shogun-devel :debug:main Didn't find receipt, going to depspec regex for: shogun-devel :debug:main Searching for dependency: pkgconfig :debug:main Found Dependency: receipt exists for pkgconfig :debug:main Searching for dependency: gcc48 :debug:main Found Dependency: receipt exists for gcc48 :debug:main Searching for dependency: hdf5 :debug:main Found Dependency: receipt exists for hdf5 :debug:main Searching for dependency: json-c :debug:main Found Dependency: receipt exists for json-c :debug:main Searching for dependency: libxml2 :debug:main Found Dependency: receipt exists for libxml2 :debug:main Searching for dependency: readline :debug:main Found Dependency: receipt exists for readline :debug:main Searching for dependency: atlas :debug:main Found Dependency: receipt exists for atlas :debug:main Searching for dependency: arpack :debug:main Found Dependency: receipt exists for arpack :debug:main Searching for dependency: eigen3 :debug:main Found Dependency: receipt exists for eigen3 :debug:main Searching for dependency: lp_solve :debug:main Found Dependency: receipt exists for lp_solve :debug:main Searching for dependency: glpk :debug:main Found Dependency: receipt exists for glpk :debug:main Searching for dependency: lzo2 :debug:main Found Dependency: receipt exists for lzo2 :debug:main Searching for dependency: snappy :debug:main Found Dependency: receipt exists for snappy :debug:main Searching for dependency: gzip :debug:main Found Dependency: receipt exists for gzip :debug:main Searching for dependency: bzip2 :debug:main Found Dependency: receipt exists for bzip2 :debug:main Searching for dependency: xz :debug:main Found Dependency: receipt exists for xz :debug:main Searching for dependency: libgcc :debug:main Found Dependency: receipt exists for libgcc :msg:main :debug:main Executing org.macports.main (shogun) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.archivefetch (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Thu Apr 16 10:32:06 CEST 2015 :notice:configure ---> Configuring shogun :debug:configure Using compiler 'Xcode Clang' :debug:configure Executing org.macports.configure (shogun) :debug:configure Environment: CC='/usr/bin/clang' CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/.CC_PRINT_OPTIONS' CFLAGS='-pipe -Os -arch x86_64' CPATH='/opt/local/include' CPPFLAGS='-I/opt/local/include' CXX='/usr/bin/clang++' CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' F77='/opt/local/bin/gfortran-mp-4.8' F77FLAGS='-m64' F90='/opt/local/bin/gfortran-mp-4.8' F90FLAGS='-pipe -Os -m64' FC='/opt/local/bin/gfortran-mp-4.8' FCFLAGS='-pipe -Os -m64' FFLAGS='-pipe -Os' INSTALL='/usr/bin/install -c' LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.9' OBJC='/usr/bin/clang' OBJCFLAGS='-pipe -Os -arch x86_64' OBJCXX='/usr/bin/clang++' OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' POSTLINKFLAGS='-L/opt/local/lib/gcc47' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src" && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5 --enable-json --enable-xml --enable-readline --enable-largefile --disable-spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light --disable-logcache --enable-shortrealkernelcache --enable-logsum-array --disable-hmm-parallel --disable-doxygen --enable-optimization --includes=/opt/local/include --libs=/opt/local/lib --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot --interfaces=cmdline_static --enable-cpudetection' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src" && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5 --enable-json --enable-xml --enable-readline --enable-largefile --disable-spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light --disable-logcache --enable-shortrealkernelcache --enable-logsum-array --disable-hmm-parallel --disable-doxygen --enable-optimization --includes=/opt/local/include --libs=/opt/local/lib --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot --interfaces=cmdline_static --enable-cpudetection :info:configure Running configure for SHOGUN version 2.1.0 :info:configure Checking for C Compiler ... :info:configure Error: no C compiler detected - cannot do anything :info:configure :info:configure Check configure.log if you do not understand why it failed. :info:configure The last 20 lines of configure.log are shown below :info:configure :info:configure :info:configure int main(void) { return 0; } :info:configure :info:configure cc -I/opt/local/include -pipe -Os -arch x86_64 ./configure-18576-954.c -o ./configure-29380-954.o -L/opt/local/lib -lgfortran -L/opt/local/lib/gcc47 :info:configure ld: warning: directory not found for option '-L/opt/local/lib/gcc47' :info:configure ld: warning: directory not found for option '-LLD_LIBRARY_PATH' :info:configure ld: library not found for -lgfortran :info:configure clang: error: linker command failed with exit code 1 (use -v to see invocation) :info:configure no object file created :info:configure :info:configure :info:configure int main(void) { return 0; } :info:configure :info:configure gcc -I/opt/local/include -pipe -Os -arch x86_64 ./configure-18576-954.c -o ./configure-29380-954.o -L/opt/local/lib -lgfortran -L/opt/local/lib/gcc47 :info:configure ld: warning: directory not found for option '-L/opt/local/lib/gcc47' :info:configure ld: warning: directory not found for option '-LLD_LIBRARY_PATH' :info:configure ld: library not found for -lgfortran :info:configure clang: error: linker command failed with exit code 1 (use -v to see invocation) :info:configure no object file created :info:configure :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src" && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5 --enable-json --enable-xml --enable-readline --enable-largefile --disable-spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light --disable-logcache --enable-shortrealkernelcache --enable-logsum-array --disable-hmm-parallel --disable-doxygen --enable-optimization --includes=/opt/local/include --libs=/opt/local/lib --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot --interfaces=cmdline_static --enable-cpudetection :info:configure Exit code: 1 :error:configure org.macports.configure for port shogun returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed

while executing

"portconfigure::configure_main org.macports.configure"

("eval" body line 1) invoked from within

"eval $procedure $targetname" :info:configure Warning: targets not executed for shogun: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :notice:configure Please see the log file for port shogun for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/main.log

Thanks a lot again. Cheers, Mariano

[mf2k (Frank Schima)]

In the future, please use WikiFormatting. That is totally unreadable. Please instead attach the new main.log file after running port clean on the port instead of pasting it into a comment unformatted.

[mariano.avino@…]

I have followed your suggestions. I installed the Xcode command line tools and cleaned the port but still my shogun installation is failing and I attached the new log file. Thank you very much.

[mf2k (Frank Schima)]

Same error as before:

Error: no C compiler detected - cannot do anything

[mf2k (Frank Schima)]

Also, the log is not a clean log. I suggest verifying that you cleaned the port.

[mariano.avino@…]

I cleaned the port before installing it again, but maybe I did it wrong. Could you please tell me how you would clean them?

[mf2k (Frank Schima)]

sudo port clean shogun