gdal upgrade to 1.11.2_2 fails

[watsodw]

See log.

[basmac]

Cc Me!

[florian@…]

Cc Me!

[florian@…]

I can confirm this on OSX 10.9 only using Apple LLVM version 6.0 (clang-600.0.54):

Undefined symbols for architecture x86_64:
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::find_last_of(char const*, unsigned long) const", referenced from:
      HDF5Dataset::HDF5ReadDoubleAttr(char const*, double**, int*) in hdf5dataset.o

Builds fine without the hdf5 variant. No issues with hdf5 using gcc on OSX 10.6.

[cmutel (Chris Mutel)]

Cc Me!

[chris.waigl@…]

Cc Me!

[hanfl@…]

Cc Me!

[Veence (Vincent)]

I’m not sure I can do something about it. I have no 10.9 system anymore. If someone finds a workaround or even a kludge, I will gladly pull it, but as is, it’s a bit way over my head (besides I gave up C++ so long ago that most of it now sounds like mumbo jumbo to me. :(

Isn’t that tied to some buggy release of the STDC++ library?

[larryv (Lawrence Velázquez)]

Cc Me!

[larryv (Lawrence Velázquez)]

Has duplicate #47925.

[larryv (Lawrence Velázquez)]

I can reproduce this on Yosemite.

[florian@…]

I know of another person who can reproduce this failure on 10.10.3.

[gbesanaostman@…]

Yes, I forgot to put this info in my ticket. I was installing port gdal on Yosemite 10.10.3 when it failed. I hope someone can come up with a solution, soon. Thanks a lot in advance!

[florian@…]

This GDAL build failure seems to be solved by an upstream patch to HDF5 (r137065, ​https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.15-patch1/src/hdf5-1.8.15-patch1-RELEASE.txt for reference). Can anyone confirm this?

[basmac]

Works for me now -

bash-3.2# port clean gdal

---> Cleaning gdal

bash-3.2# port install gdal +expat+geos+hdf5+netcdf+spatialite

---> Computing dependencies for gdal

---> Fetching archive for gdal

---> Attempting to fetch gdal-1.11.2_2+expat+geos+hdf5+netcdf+spatialite.darwin_14.x86_64.tbz2 from ​http://packages.macports.org/gdal

---> Attempting to fetch gdal-1.11.2_2+expat+geos+hdf5+netcdf+spatialite.darwin_14.x86_64.tbz2 from ​http://nue.de.packages.macports.org/macports/packages/gdal

---> Attempting to fetch gdal-1.11.2_2+expat+geos+hdf5+netcdf+spatialite.darwin_14.x86_64.tbz2 from ​http://mse.uk.packages.macports.org/sites/packages.macports.org/gdal

---> Fetching distfiles for gdal

---> Attempting to fetch gdal-1.11.2.tar.gz from ​http://distfiles.macports.org/gdal

---> Verifying checksums for gdal

---> Extracting gdal

---> Applying patches to gdal

---> Configuring gdal

---> Staging gdal into destroot

---> Installing gdal @1.11.2_2+expat+geos+hdf5+netcdf+spatialite

---> Deactivating gdal @1.11.2_2+expat

---> Cleaning gdal

---> Activating gdal @1.11.2_2+expat+geos+hdf5+netcdf+spatialite

---> Cleaning gdal

---> Updating database of binaries

---> Scanning binaries for linking errors

---> No broken files found.

bash-3.2#

[larryv (Lawrence Velázquez)]

Yes, I can destroot gdal +hdf5 successfully now. I’m going to call this fixed by r137065.

[gbesanaostman@…]

I tried doing it in my Mac:

$ sudo port clean gdal ---> Cleaning gdal

$ sudo port install gdal +curl +geos +hdf5 +netcdf ---> Computing dependencies for gdal ---> Fetching archive for gdal ---> Attempting to fetch gdal-1.11.2_2+curl+expat+geos+hdf5+netcdf.darwin_14.x86_64.tbz2 from ​http://packages.macports.org/gdal ---> Attempting to fetch gdal-1.11.2_2+curl+expat+geos+hdf5+netcdf.darwin_14.x86_64.tbz2 from ​http://mse.uk.packages.macports.org/sites/packages.macports.org/gdal ---> Attempting to fetch gdal-1.11.2_2+curl+expat+geos+hdf5+netcdf.darwin_14.x86_64.tbz2 from ​http://lil.fr.packages.macports.org/gdal ---> Fetching distfiles for gdal ---> Verifying checksums for gdal ---> Extracting gdal ---> Applying patches to gdal ---> Configuring gdal ---> Building gdal Error: org.macports.build for port gdal returned: command execution failed Please see the log file for port gdal for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/main.log

To report a bug, follow the instructions in the guide:

​http://guide.macports.org/#project.tickets

Error: Processing of port gdal failed

Its not doing the destroot portion. Is there something I am doing wrong?

[larryv (Lawrence Velázquez)]

Did you get the new hdf5?

% sudo port selfupdate
% sudo port upgrade outdated

[gbesanaostman@…]

The selfupdate and upgrade did it! That step, i missed. So, after doing that, I got the hdf5 update and everything went well with gdal. Thanks a bunch!