py27-pygrib @1.9.9: ld: library not found for -lopenjpeg

[christopher.edwards@…]

I have tried to install/build through Macports and src with no luck. Attached MACPORT Log.

Building version 2.0.0 Output:

python setup.py build
reading from setup.cfg...running build
running build_py
running build_ext
building 'pygrib' extension
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/jasper -I/opt/local/include -I/usr/include -I/usr/include -Ig2clib_src -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c pygrib.c -o build/temp.macosx-10.9-intel-2.7/pygrib.o
pygrib.c:12092:18: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
    __pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
                 ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pygrib.c:12502:18: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
    __pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
                 ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pygrib.c:16175:53: warning: passing 'void **' to parameter of type 'const void **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
  __pyx_v_err = grib_get_message(__pyx_v_self->_gh, (&__pyx_v_message), (&__pyx_v_size));
                                                    ^~~~~~~~~~~~~~~~~~
/opt/local/include/grib_api.h:562:51: note: passing argument to parameter 'message' here
int grib_get_message(grib_handle* h ,const void** message, size_t *message_length  );
                                                  ^
pygrib.c:35462:32: warning: unused function '__Pyx_PyUnicode_FromString' [-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
                               ^
pygrib.c:301:29: warning: unused function '__Pyx_Py_UNICODE_strlen' [-Wunused-function]
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
                            ^
pygrib.c:35577:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                ^
pygrib.c:33784:28: warning: unused function '__Pyx_CyFunction_InitDefaults' [-Wunused-function]
static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
                           ^
pygrib.c:33793:27: warning: unused function '__Pyx_CyFunction_SetDefaultsTuple' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
                          ^
pygrib.c:33798:27: warning: unused function '__Pyx_CyFunction_SetDefaultsKwDict' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) {
                          ^
pygrib.c:33803:27: warning: unused function '__Pyx_CyFunction_SetAnnotationsDict' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) {
                          ^
pygrib.c:33901:27: warning: unused function '__Pyx_ErrFetch' [-Wunused-function]
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) {
                          ^
pygrib.c:34412:32: warning: unused function '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
                               ^
pygrib.c:34426:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
                               ^
pygrib.c:34520:26: warning: unused function '__Pyx_PyUnicode_Equals' [-Wunused-function]
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
                         ^
pygrib.c:35241:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
                         ^
15 warnings generated.
pygrib.c:12092:18: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
    __pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
                 ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pygrib.c:12502:18: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
    __pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
                 ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pygrib.c:16175:53: warning: passing 'void **' to parameter of type 'const void **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
  __pyx_v_err = grib_get_message(__pyx_v_self->_gh, (&__pyx_v_message), (&__pyx_v_size));
                                                    ^~~~~~~~~~~~~~~~~~
/opt/local/include/grib_api.h:562:51: note: passing argument to parameter 'message' here
int grib_get_message(grib_handle* h ,const void** message, size_t *message_length  );
                                                  ^
pygrib.c:35462:32: warning: unused function '__Pyx_PyUnicode_FromString' [-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
                               ^
pygrib.c:301:29: warning: unused function '__Pyx_Py_UNICODE_strlen' [-Wunused-function]
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
                            ^
pygrib.c:35577:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                ^
pygrib.c:33784:28: warning: unused function '__Pyx_CyFunction_InitDefaults' [-Wunused-function]
static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
                           ^
pygrib.c:33793:27: warning: unused function '__Pyx_CyFunction_SetDefaultsTuple' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
                          ^
pygrib.c:33798:27: warning: unused function '__Pyx_CyFunction_SetDefaultsKwDict' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) {
                          ^
pygrib.c:33803:27: warning: unused function '__Pyx_CyFunction_SetAnnotationsDict' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) {
                          ^
pygrib.c:33901:27: warning: unused function '__Pyx_ErrFetch' [-Wunused-function]
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) {
                          ^
pygrib.c:34412:32: warning: unused function '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
                               ^
pygrib.c:34426:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
                               ^
pygrib.c:34520:26: warning: unused function '__Pyx_PyUnicode_Equals' [-Wunused-function]
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
                         ^
pygrib.c:35241:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
                         ^
15 warnings generated.
cc -bundle -undefined dynamic_lookup -arch x86_64 -arch i386 -Wl,-F. build/temp.macosx-10.9-intel-2.7/pygrib.o -L/opt/local/lib -L/opt/local/lib64 -L/opt/local/lib -L/opt/local/lib64 -L/opt/local/lib -L/opt/local/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/opt/local/lib -L/opt/local/lib64 -L/opt/local/lib -L/opt/local/lib64 -L/opt/local/lib -L/opt/local/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lgrib_api -ljasper -lopenjpeg -lpng -lz -o build/lib.macosx-10.9-intel-2.7/pygrib.so
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/usr/lib64'
ld: warning: directory not found for option '-L/usr/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/usr/lib64'
ld: warning: directory not found for option '-L/usr/lib64'
ld: library not found for -lopenjpeg
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'cc' failed with exit status 1

[ryandesign (Ryan Carsten Schmidt)]

Looks like maybe a dependency on port openjpeg15 is needed.

[christopher.edwards@…]

Not sure if it matters but I also have version 1.13.1_3 of grib_api installed

port info grib_api
grib_api @1.13.1_3 (science)

Thanks for your help

[christopher.edwards@…]

Also I have

port info openjpeg
openjpeg @2.1.0 (graphics)

[ryandesign (Ryan Carsten Schmidt)]

Note that "port info" shows you what is available, not what is installed. If you want to know what's installed, use "port installed".

[ryandesign (Ryan Carsten Schmidt)]

The grib_api port (on which the py-pygrib port depends) was changed in June to use openjpeg2 (libopenjp2) instead of openjpeg15 (libopenjpeg). py-pygrib might need a revbump to pick that up, or a patch or version update. However, see also #49096 in which it is proposed that grib_api might switch back to openjpeg15.

[reneeotten (Renee Otten)]

In 53ba3ac24b14bc57cca70e540baa13880b814da4/macports-ports (master):

py-pygrib: update to 2.0.4

• remove py34 subport
• add size to checksums
• remove patch, included upstream
• explicitly add library dependencies

Closes: #48281