apbs @1.4.1: restore optimizations

[howarth.at.macports@…]

The reworked apbs packaging dropped the optimizations flags from the previous packaging. These should be restored as the current packaging runs much slower when compiled without optimization flags.

[howarth.at.macports@…]

Portfile diff to restore the dropped optimization flags from the previous packaging

[ryandesign (Ryan Carsten Schmidt)]

Thanks.

[ryandesign (Ryan Carsten Schmidt)]

The permissions of the binaries were wrong, because they were specified in decimal instead of octal:

--wxrw--wt  1 root  wheel    96760 Nov 12 01:09 /opt/local/bin/apbs-analysis
--wxrw--wt  1 root  wheel    36216 Nov 12 01:09 /opt/local/bin/apbs-benchmark
--wxrw--wt  1 root  wheel   113884 Nov 12 01:09 /opt/local/bin/apbs-born
--wxrw--wt  1 root  wheel   119496 Nov 12 01:09 /opt/local/bin/apbs-coulomb
--wxrw--wt  1 root  wheel    34112 Nov 12 01:09 /opt/local/bin/apbs-del2dx
--wxrw--wt  1 root  wheel    88244 Nov 12 01:09 /opt/local/bin/apbs-dx2mol
--wxrw--wt  1 root  wheel    88296 Nov 12 01:09 /opt/local/bin/apbs-dx2uhbd
--wxrw--wt  1 root  wheel    96484 Nov 12 01:09 /opt/local/bin/apbs-dxmath
--wxrw--wt  1 root  wheel   104928 Nov 12 01:09 /opt/local/bin/apbs-mergedx
--wxrw--wt  1 root  wheel   108944 Nov 12 01:09 /opt/local/bin/apbs-mergedx2
--wxrw--wt  1 root  wheel    34292 Nov 12 01:09 /opt/local/bin/apbs-mgmesh
--wxrw--wt  1 root  wheel    88620 Nov 12 01:09 /opt/local/bin/apbs-multivalue
--wxrw--wt  1 root  wheel    13702 Mar 16  2015 /opt/local/bin/apbs-psize.py
--wxrw--wt  1 root  wheel   113436 Nov 12 01:09 /opt/local/bin/apbs-similarity
--wxrw--wt  1 root  wheel    96800 Nov 12 01:09 /opt/local/bin/apbs-smooth
--wxrw--wt  1 root  wheel    34032 Nov 12 01:09 /opt/local/bin/apbs-tensor2dx
--wxrw--wt  1 root  wheel    34548 Nov 12 01:09 /opt/local/bin/apbs-uhbd_asc2bin
--wxrw--wt  1 root  wheel    84324 Nov 12 01:09 /opt/local/bin/apbs-value

I committed a fix for this along with your patch in r142447.