py27-scipy+atlas does not import properly

[smithsp (Sterling Smith)]

After installing py27-scipy+atlas, scipy.interpolate will not import correctly. Here are steps I took and the output

~/OMFIT-source2 117 : sudo port install py27-scipy +atlas
--->  Computing dependencies for py27-scipy
--->  Deactivating py27-scipy @0.16.1_0+gfortran
--->  Cleaning py27-scipy
--->  Activating py27-scipy @0.16.1_0+atlas+gfortran
--->  Cleaning py27-scipy
--->  Scanning binaries for linking errors
--->  No broken files found.
~/OMFIT-source2 118 : which python
/opt/local/bin/python
~/OMFIT-source2 119 : python -c 'import scipy.interpolate'
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/interpolate/__init__.py", line 145, in <module>
    from .interpolate import *
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/interpolate/interpolate.py", line 15, in <module>
    import scipy.linalg
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/linalg/__init__.py", line 172, in <module>
    from .misc import *
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/linalg/misc.py", line 6, in <module>
    from .lapack import get_lapack_funcs
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/linalg/lapack.py", line 356, in <module>
    from scipy.linalg import _flapack
ImportError: dlopen(/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/linalg/_flapack.so, 2): Symbol not found: _cgegv_
  Referenced from: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/linalg/_flapack.so
  Expected in: flat namespace
 in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/linalg/_flapack.so
~/OMFIT-source2 120 : sudo port selfupdate
--->  Updating MacPorts base sources using rsync
MacPorts base version 2.3.4 installed,
MacPorts base version 2.3.4 downloaded.
--->  Updating the ports tree
--->  MacPorts base is already the latest version

The ports tree has been updated. To upgrade your installed ports, you should run
  port upgrade outdated
~/OMFIT-source2 121 : port outdated | grep scipy
~/OMFIT-source2 122 : 

Note that atlas took a long time to build, during which I closed my laptop twice, which induced the computer sleep state. The next step I plan on taking is rebuilding atlas, but will not try that until tomorrow. If there are any pointers for anything else to try, I would appreciate it.

[seanfarley (Sean Farley)]

Do you have anything installed in /usr/local (or did you pip install anything)?

[smithsp (Sterling Smith)]

Both are distinct possibilities, although I recently reinstalled all of python27 and required python packages for my application using macports, so I am pretty sure I have clobbered any macports pip installations. And I have now moved /usr/local out of the way, then reinstalled atlas, numpy +atlas, and scipy +atlas, but I am getting the same error.

[michaelld (Michael Dickens)]

A -lot- of changes have taken place since this issue was opened. I'm going to go ahead and close the issue. If it is still an issue, please post an update as to what's going on, with updated logs. Please make sure you're using the latest version of MacPorts and latest ports (e.g., as obtained via "sudo port selfupdate").

[michaelld (Michael Dickens)]

Closing since no updates in 8 months.