install of doxygen fails

[stiffstone@…]

:debug:configure Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DPython_ADDITIONAL_VERSIONS=2.7 -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10
:info:configure -- Could NOT find Threads (missing:  Threads_FOUND)
:info:configure CMake Error at cmake/FindIconv.cmake:121 (MESSAGE):
:info:configure   Unable to determine iconv() signature
:info:configure Call Stack (most recent call first):
:info:configure   CMakeLists.txt:63 (find_package)
:info:configure
:info:configure
:info:configure -- Configuring incomplete, errors occurred!
:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10/CMakeFiles/CMakeOutput.log".

I have installed command line tools 7.3.1.

I am running Mac OS X 10.11.6

I removed port and re-installed from the website. Still the same problem.

n py27-imagesize py27-jinja2 py27-pygments py27-snowballstemmer sphinx_select py27-wxpython-3.0 wxPython-3.0 wxWidgets-common wxWidgets_select qwtplot3d uhd gzip libusb py27-requests volk orc xmlto coreutils docbook-xml docbook-xml-4.1.2 docbook-xml-4.2 xmlcatmgr docbook-xml-4.3 docbook-xml-4.4 docbook-xml-4.5 docbook-xml-5.0 docbook-xsl findutils fop getopt libpaper
--->  Configuring doxygen
Error: org.macports.configure for port doxygen returned: configure failure: command execution failed
Error: Failed to install doxygen
Please see the log file for port doxygen for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/main.log
Error: The following dependencies were not installed: doxygen fftw-3-single fftw-3 graphviz fontconfig freetype gd2 jpeg tiff xpm xorg-libXext xorg-libX11 xorg-kbproto xorg-libXau xorg-xproto xorg-libXdmcp xorg-libxcb xorg-libpthread-stubs xorg-xcb-proto xorg-xextproto xorg-libXt xorg-libsm xorg-libice gts glib2 libffi pcre libnetpbm libLASi pango Xft2 xrender xorg-renderproto cairo libpixman xorg-xcb-util gobject-introspection libtool py27-mako py27-beaker py27-setuptools py27-markupsafe harfbuzz graphite2 urw-fonts webp xorg-libXaw xorg-libXmu gsl jack db60 libsamplerate libsndfile flac libogg libvorbis libxslt readline libsdl xorg-libXrandr xorg-randrproto log4cpp pkgconfig portaudio py27-cheetah py27-lxml py27-matplotlib py27-cairo py27-cycler py27-six py27-dateutil py27-tz py27-numpy libgcc cctools llvm-3.8 libcxx llvm_select gmp isl ld64 ld64-latest libmpc mpfr py27-cython cython_select py27-nose nosetests_select py27-parsing py27-pyobjc-cocoa py27-pyobjc py27-py2app py27-macholib py27-modulegraph py27-altgraph py27-tornado py27-backports_abc py27-certifi py27-monotonic py27-singledispatch qhull py27-opengl py27-Pillow lcms2 openjpeg jbigkit py27-tkinter tk tcl xorg-libXScrnSaver xorg-scrnsaverproto py27-opengl-accelerate py27-pygtk atk gtk2 gdk-pixbuf2 jasper shared-mime-info hicolor-icon-theme xorg-libXcomposite xorg-compositeproto xorg-libXfixes xorg-fixesproto xorg-libXcursor xorg-libXdamage xorg-damageproto xorg-libXi xorg-inputproto xorg-libXinerama xorg-xineramaproto libglade2 py27-gobject py27-pyqt4 dbus-python27 dbus dbus-glib py27-sip qt4-mac libmng py27-pyqwt qwt52 py27-scipy swig-python swig py27-sphinx py27-alabaster py27-babel py27-docutils py27-roman py27-imagesize py27-jinja2 py27-pygments py27-snowballstemmer sphinx_select py27-wxpython-3.0 wxPython-3.0 wxWidgets-common wxWidgets_select qwtplot3d uhd gzip libusb py27-requests volk orc xmlto coreutils docbook-xml docbook-xml-4.1.2 docbook-xml-4.2 xmlcatmgr docbook-xml-4.3 docbook-xml-4.4 docbook-xml-4.5 docbook-xml-5.0 docbook-xsl findutils fop getopt libpaper
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port gnuradio failed
MacPro-TOL:~ kyle$ sudo port install doxygen
--->  Computing dependencies for doxygen
--->  Configuring doxygen
Error: org.macports.configure for port doxygen returned: configure failure: command execution failed
Please see the log file for port doxygen for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/main.log
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port doxygen failed

[mf2k (Frank Schima)]

The Priority field is for use by Macports team members only.

[stiffstone@…]

ls /usr/include/pthread*
/usr/include/pthread.h		/usr/include/pthread_spis.h
/usr/include/pthread_impl.h

/usr/include/pthread:
pthread.h	pthread_spis.h	sched.h
pthread_impl.h	qos.h		spawn.h
MacPro

ls /usr/include/errno.h
/usr/include/errno.h
MacPro

[mf2k (Frank Schima)]

In the future, please use WikiFormatting, fill in the Port field and Cc the port maintainers (port info --maintainers doxygen), if any.

[mikhirev@…]

The same issue occurs on macos 10.12. I attached the main.log file.

[mikhirev@…]

I'm sorry, in my case the failure was caused by misconfiguration: macports.conf contained

macosx_deployment_target 10.6

After commenting out this line, installation was successful.

[jdolan (Jay Dolan)]

I was able to fix this issue by running:

    sudo port selfupdate
    sudo port clean doxygen
    sudo port install doxygen

Hope this helps.

[ryandesign (Ryan Carsten Schmidt)]

stiffstone, please check if this is still a problem with doxygen 1.8.13 which is now in MacPorts.

[ryandesign (Ryan Carsten Schmidt)]

No reply; the reporter never provided a main.log file showing what the problem was. The error message shown is similar to #50763.