netcdf @4.4.1: update to 4.4.1.1

[Dave-Allured (Dave Allured)]

netcdf-C released 2016 November 23: ​http://www.unidata.ucar.edu/blogs/news/entry/netcdf-4-4-1-1

Please also update dependency from hdf5-18 to hdf5 1.10.1 if it can be done through the same ticket.

See also #54139: Update hdf5 to 1.10.1.

See also #54101: Ports that depend on hdf5-18 should switch to hdf5. See caveats in this ticket.

[Dave-Allured (Dave Allured)]

MacPorts hdf5 is now updated to 1.10.1 as of 2017 May 22. See #54139.

My two caveats in #54101 are now resolved for Netcdf. This port is ready for update to Netcdf version 4.4.1.1, with dependency change hdf5-18 to normal hdf5.

[dschlaep (daniel)]

I am having the same hdf5 header/library mismatch as described in #52289 when loading netCDF files with the R package ncdf4 v1.16:

The HDF5 header files used to compile this application do not match the version used by the HDF5 library to which this application is linked.

I cannot wait until the macport netcdf is updated to version 4.4.1.1 and this works again.

I was able to get the header and library version of hdf5 that is used by ncdf4 to agree with the following steps:

1) install macports 'netcdf' (4.4.1_3+dap+netcdf4) 'hdf5-18' (1.8.18_0+cxx+hl)

2) copy (or create softlinks to) the content

• from /opt/local/lib/hdf5-18/bin to /opt/local/bin
• from /opt/local/lib/hdf5-18/include to /opt/local/include
• from /opt/local/lib/hdf5-18/lib to /opt/local/lib

3) install the R package 'ncdf4' from source

Now, I can load netCDF files with ncdf4 without segfault.

[tenomoto (Takeshi Enomoto)]

Done in [6b3cb0cd3a6a8345bc91f950cf528c4801bfe7f5/macports-ports].