cdo @1.9.2: error: variable has incomplete type 'struct mach_task_basic_info'

[sibylles]

Mac OSX 10.7.5

MacPorts base version 2.4.2 installed,
The ports tree has been updated. To upgrade your installed ports, you should run
  port upgrade outdated

Sibylles-MacBook-Air:~ Sibylle$ sudo port -d install cdo
DEBUG: Copying /Users/Sibylle/Library/Preferences/com.apple.dt.Xcode.plist to /opt/local/var/macports/home/Library/Preferences
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/cdo
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
DEBUG: Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
DEBUG: Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: Sourcing PortGroup cxx11 1.1 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/cxx11-1.1.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Executing variant eccodes provides eccodes
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Chosen compiler macports-clang-5.0 is provided by a port, adding dependency
DEBUG: Adding depends_build port:clang-5.0
DEBUG: Adding depends_skip_archcheck clang-5.0
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Running callback cxx11.add_dependencies
DEBUG: Finished running callback cxx11.add_dependencies
DEBUG: Attempting ln -sf /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/cdo/work
DEBUG: dropping privileges: euid changed to 502, egid changed to 501.
DEBUG: Starting logging for cdo
DEBUG: epoch: in tree: 2 installed: 2
DEBUG: clang-5.0 5.0.1_0 exists in the ports tree
DEBUG: clang-5.0 5.0.1_0 +analyzer+libstdcxx is the latest installed
DEBUG: clang-5.0 5.0.1_0 +analyzer+libstdcxx is active
DEBUG: Merging existing variants '+analyzer+libstdcxx' into variants
DEBUG: new fully merged portvariants: libstdcxx + analyzer +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/llvm-5.0
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for configure.pre_args
DEBUG: Re-registering default for build.dir
DEBUG: Re-registering default for destroot.target
DEBUG: Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for build.dir
DEBUG: compiler clang 425.0.28 blacklisted because it matches {clang < 602}
Warning: All compilers are either blacklisted or unavailable; defaulting to first fallback option
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Executing variant analyzer provides analyzer
DEBUG: Executing variant libstdcxx provides libstdcxx
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Chosen compiler macports-clang-4.0 is provided by a port, adding dependency
DEBUG: Adding depends_build port:clang-4.0
DEBUG: Adding depends_skip_archcheck clang-4.0
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! clang-5.0 5.0.1_0 >= clang-5.0 5.0.1_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: libxml2 2.9.7_0 exists in the ports tree
DEBUG: libxml2 2.9.7_0  is the latest installed
DEBUG: libxml2 2.9.7_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/textproc/libxml2
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libxml2 2.9.7_0 >= libxml2 2.9.7_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: libiconv 1.15_0 exists in the ports tree
DEBUG: libiconv 1.15_0  is the latest installed
DEBUG: libiconv 1.15_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/textproc/libiconv
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libiconv 1.15_0 >= libiconv 1.15_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: xz 5.2.3_0 exists in the ports tree
DEBUG: xz 5.2.3_0  is the latest installed
DEBUG: xz 5.2.3_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/archivers/xz
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! xz 5.2.3_0 >= xz 5.2.3_0
DEBUG: epoch: in tree: 2 installed: 2
DEBUG: gettext 0.19.8.1_0 exists in the ports tree
DEBUG: gettext 0.19.8.1_0  is the latest installed
DEBUG: gettext 0.19.8.1_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/gettext
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: compiler clang 425.0.28 not blacklisted because it doesn't match {clang < 211.10.1}
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! gettext 0.19.8.1_0 >= gettext 0.19.8.1_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: expat 2.2.5_0 exists in the ports tree
DEBUG: expat 2.2.5_0  is the latest installed
DEBUG: expat 2.2.5_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/textproc/expat
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! expat 2.2.5_0 >= expat 2.2.5_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: ncurses 6.0-20171125_0 exists in the ports tree
DEBUG: ncurses 6.0-20171125_0  is the latest installed
DEBUG: ncurses 6.0-20171125_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/ncurses
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! ncurses 6.0-20171125_0 >= ncurses 6.0-20171125_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: zlib 1.2.11_0 exists in the ports tree
DEBUG: zlib 1.2.11_0  is the latest installed
DEBUG: zlib 1.2.11_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/archivers/zlib
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! zlib 1.2.11_0 >= zlib 1.2.11_0
DEBUG: epoch: in tree: 1 installed: 1
DEBUG: libomp 5.0.0_0 exists in the ports tree
DEBUG: libomp 3.8.1_3 +universal is the latest installed
DEBUG: libomp 3.8.1_3 +universal is active
DEBUG: Merging existing variants '+universal' into variants
DEBUG: new fully merged portvariants: universal +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/libomp
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for configure.pre_args
DEBUG: Re-registering default for build.dir
DEBUG: Re-registering default for destroot.target
DEBUG: Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
DEBUG: compiler clang 425.0.28 blacklisted because it matches {clang < 500}
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Executing variant universal provides universal
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Chosen compiler macports-clang-3.4 is provided by a port, adding dependency
DEBUG: Adding depends_build port:clang-3.4
DEBUG: Adding depends_skip_archcheck clang-3.4
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libomp 3.8.1_3 >= libomp 3.8.1_3
DEBUG: epoch: in tree: 2 installed: 2
DEBUG: llvm-5.0 5.0.1_0 exists in the ports tree
DEBUG: llvm-5.0 5.0.1_0  is the latest installed
DEBUG: llvm-5.0 5.0.1_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/llvm-5.0
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for configure.pre_args
DEBUG: Re-registering default for build.dir
DEBUG: Re-registering default for destroot.target
DEBUG: Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for build.dir
DEBUG: compiler clang 425.0.28 blacklisted because it matches {clang < 602}
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Chosen compiler macports-clang-4.0 is provided by a port, adding dependency
DEBUG: Adding depends_build port:clang-4.0
DEBUG: Adding depends_skip_archcheck clang-4.0
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! llvm-5.0 5.0.1_0 >= llvm-5.0 5.0.1_0
DEBUG: epoch: in tree: 20090923 installed: 20090923
DEBUG: libedit 20170329-3.1_2 exists in the ports tree
DEBUG: libedit 20170329-3.1_2  is the latest installed
DEBUG: libedit 20170329-3.1_2  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/libedit
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libedit 20170329-3.1_2 >= libedit 20170329-3.1_2
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: libffi 3.2.1_0 exists in the ports tree
DEBUG: libffi 3.2.1_0  is the latest installed
DEBUG: libffi 3.2.1_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/libffi
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libffi 3.2.1_0 >= libffi 3.2.1_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: xar 1.6.1_0 exists in the ports tree
DEBUG: xar 1.6.1_0  is the latest installed
DEBUG: xar 1.6.1_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/archivers/xar
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! xar 1.6.1_0 >= xar 1.6.1_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: bzip2 1.0.6_0 exists in the ports tree
DEBUG: bzip2 1.0.6_0  is the latest installed
DEBUG: bzip2 1.0.6_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/archivers/bzip2
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
DEBUG: epoch: in tree: 1 installed: 1
DEBUG: openssl 1.0.2n_0 exists in the ports tree
DEBUG: openssl 1.0.2n_0  is the latest installed
DEBUG: openssl 1.0.2n_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/openssl
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! openssl 1.0.2n_0 >= openssl 1.0.2n_0
DEBUG: epoch: in tree: 1 installed: 1
DEBUG: libcxx 3.9.1_1 exists in the ports tree
DEBUG: libcxx 3.9.1_1 +universal is the latest installed
DEBUG: libcxx 3.9.1_1 +universal is active
DEBUG: Merging existing variants '+universal' into variants
DEBUG: new fully merged portvariants: universal +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/libcxx
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Executing variant universal provides universal
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libcxx 3.9.1_1 >= libcxx 3.9.1_1
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: perl5 5.24.2_0 exists in the ports tree
DEBUG: perl5 5.24.2_0 +perl5_24 is the latest installed
DEBUG: perl5 5.24.2_0 +perl5_24 is active
DEBUG: Merging existing variants '+perl5_24' into variants
DEBUG: new fully merged portvariants: perl5_24 +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/perl5
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Re-registering default for configure.universal_args
DEBUG: Sourcing PortGroup perl5 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/perl5-1.0.tcl
DEBUG: universal_variant is false, so not adding the default universal variant
DEBUG: Executing variant perl5_24 provides perl5_24
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! perl5 5.24.2_0 >= perl5 5.24.2_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: perl5.24 5.24.3_0 exists in the ports tree
DEBUG: perl5.24 5.24.3_0  is the latest installed
DEBUG: perl5.24 5.24.3_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/perl5
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Re-registering default for configure.universal_args
DEBUG: Sourcing PortGroup perl5 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/perl5-1.0.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! perl5.24 5.24.3_0 >= perl5.24 5.24.3_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: gdbm 1.13_3 exists in the ports tree
DEBUG: gdbm 1.13_3  is the latest installed
DEBUG: gdbm 1.13_3  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/databases/gdbm
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! gdbm 1.13_3 >= gdbm 1.13_3
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: readline 7.0.003_1 exists in the ports tree
DEBUG: readline 7.0.003_1  is the latest installed
DEBUG: readline 7.0.003_1  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/readline
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! readline 7.0.003_1 >= readline 7.0.003_1
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: llvm_select 2_0 exists in the ports tree
DEBUG: llvm_select 2_0  is the latest installed
DEBUG: llvm_select 2_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/sysutils/llvm_select
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: universal_variant is false, so not adding the default universal variant
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! llvm_select 2_0 >= llvm_select 2_0
DEBUG: epoch: in tree: 2 installed: 2
DEBUG: python27 2.7.14_0 exists in the ports tree
DEBUG: python27 2.7.14_0  is the latest installed
DEBUG: python27 2.7.14_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/python27
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! python27 2.7.14_0 >= python27 2.7.14_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: db48 4.8.30_4 exists in the ports tree
DEBUG: db48 4.8.30_4  is the latest installed
DEBUG: db48 4.8.30_4  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/databases/db48
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! db48 4.8.30_4 >= db48 4.8.30_4
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: sqlite3 3.21.0_0 exists in the ports tree
DEBUG: sqlite3 3.21.0_0  is the latest installed
DEBUG: sqlite3 3.21.0_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/databases/sqlite3
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! sqlite3 3.21.0_0 >= sqlite3 3.21.0_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: python_select 0.3_7 exists in the ports tree
DEBUG: python_select 0.3_7  is the latest installed
DEBUG: python_select 0.3_7  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/sysutils/python_select
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: universal_variant is false, so not adding the default universal variant
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! python_select 0.3_7 >= python_select 0.3_7
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: python2_select 0.0_2 exists in the ports tree
DEBUG: python2_select 0.0_2  is the latest installed
DEBUG: python2_select 0.0_2  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/sysutils/python2_select
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: universal_variant is false, so not adding the default universal variant
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! python2_select 0.0_2 >= python2_select 0.0_2
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: clang_select 2_0 exists in the ports tree
DEBUG: clang_select 2_0  is the latest installed
DEBUG: clang_select 2_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/sysutils/clang_select
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: universal_variant is false, so not adding the default universal variant
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! clang_select 2_0 >= clang_select 2_0
DEBUG: epoch: in tree: 2 installed: 2
DEBUG: ld64 3_0 exists in the ports tree
DEBUG: ld64 3_0  is the latest installed
DEBUG: ld64 3_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/ld64
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! ld64 3_0 >= ld64 3_0
DEBUG: epoch: in tree: 2 installed: 2
DEBUG: ld64-latest 274.2_2 exists in the ports tree
DEBUG: ld64-latest 274.2_2 +llvm34 is the latest installed
DEBUG: ld64-latest 274.2_2 +llvm34 is active
DEBUG: Merging existing variants '+llvm34' into variants
DEBUG: new fully merged portvariants: llvm34 +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/ld64
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: compiler clang 425.0.28 not blacklisted because it doesn't match {clang < 300}
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Executing variant llvm34 provides llvm34
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! ld64-latest 274.2_2 >= ld64-latest 274.2_2
DEBUG: epoch: in tree: 1 installed: 1
DEBUG: llvm-3.4 3.4.2_12 exists in the ports tree
DEBUG: llvm-3.4 3.4.2_12  is the latest installed
DEBUG: llvm-3.4 3.4.2_12  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/llvm-3.4
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: compiler gcc-4.2 blacklisted because it's not installed or it doesn't work
DEBUG: compiler clang 425.0.28 not blacklisted because it doesn't match {clang < 421}
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! llvm-3.4 3.4.2_12 >= llvm-3.4 3.4.2_12
DEBUG: epoch: in tree: 3 installed: 3
DEBUG: netcdf 4.4.1.1_1 exists in the ports tree
DEBUG: netcdf 4.4.1.1_1 +dap+netcdf4 is the latest installed
DEBUG: netcdf 4.4.1.1_1 +dap+netcdf4 is active
DEBUG: Merging existing variants '+dap+netcdf4' into variants
DEBUG: new fully merged portvariants: netcdf4 + dap +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/netcdf
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
DEBUG: Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
DEBUG: Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
DEBUG: Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for configure.pre_args
DEBUG: Re-registering default for build.dir
DEBUG: Re-registering default for destroot.target
DEBUG: Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Executing variant netcdf4 provides netcdf4
DEBUG: Executing variant dap provides dap
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! netcdf 4.4.1.1_1 >= netcdf 4.4.1.1_1
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: hdf5 1.10.1_2 exists in the ports tree
DEBUG: hdf5 1.10.1_2 +cxx+hl is the latest installed
DEBUG: hdf5 1.10.1_2 +cxx+hl is active
DEBUG: Merging existing variants '+cxx+hl' into variants
DEBUG: new fully merged portvariants: hl + cxx +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/hdf5
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
DEBUG: Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
DEBUG: Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Executing variant hl provides hl
DEBUG: Executing variant cxx provides cxx
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! hdf5 1.10.1_2 >= hdf5 1.10.1_2
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: curl 7.57.0_2 exists in the ports tree
DEBUG: curl 7.57.0_2 +ssl is the latest installed
DEBUG: curl 7.57.0_2 +ssl is active
DEBUG: Merging existing variants '+ssl' into variants
DEBUG: new fully merged portvariants: ssl +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/net/curl
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Executing variant ssl provides ssl
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! curl 7.57.0_2 >= curl 7.57.0_2
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: libidn2 2.0.4_0 exists in the ports tree
DEBUG: libidn2 2.0.4_0  is the latest installed
DEBUG: libidn2 2.0.4_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/mail/libidn2
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libidn2 2.0.4_0 >= libidn2 2.0.4_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: libunistring 0.9.8_0 exists in the ports tree
DEBUG: libunistring 0.9.8_0  is the latest installed
DEBUG: libunistring 0.9.8_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/textproc/libunistring
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libunistring 0.9.8_0 >= libunistring 0.9.8_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: libpsl 0.19.1_2 exists in the ports tree
DEBUG: libpsl 0.19.1_2  is the latest installed
DEBUG: libpsl 0.19.1_2  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/net/libpsl
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libpsl 0.19.1_2 >= libpsl 0.19.1_2
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: glib2 2.54.2_1 exists in the ports tree
DEBUG: glib2 2.54.2_1 +x11 is the latest installed
DEBUG: glib2 2.54.2_1 +x11 is active
DEBUG: Merging existing variants '+x11' into variants
DEBUG: new fully merged portvariants: x11 +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/glib2
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: compiler clang 425.0.28 not blacklisted because it doesn't match {clang < 318}
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: adding the default universal variant
DEBUG: Executing variant x11 provides x11
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! glib2 2.54.2_1 >= glib2 2.54.2_1
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: pcre 8.41_0 exists in the ports tree
DEBUG: pcre 8.41_0  is the latest installed
DEBUG: pcre 8.41_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/pcre
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! pcre 8.41_0 >= pcre 8.41_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: curl-ca-bundle 7.57.0_0 exists in the ports tree
DEBUG: curl-ca-bundle 7.57.0_0  is the latest installed
DEBUG: curl-ca-bundle 7.57.0_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/net/curl
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: universal_variant is false, so not adding the default universal variant
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! curl-ca-bundle 7.57.0_0 >= curl-ca-bundle 7.57.0_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: udunits2 2.2.25_0 exists in the ports tree
DEBUG: udunits2 2.2.25_0  is the latest installed
DEBUG: udunits2 2.2.25_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/udunits2
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for configure.pre_args
DEBUG: Re-registering default for build.dir
DEBUG: Re-registering default for destroot.target
DEBUG: Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! udunits2 2.2.25_0 >= udunits2 2.2.25_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: cunit 2.1-3_1 exists in the ports tree
DEBUG: cunit 2.1-3_1  is the latest installed
DEBUG: cunit 2.1-3_1  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/cunit
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! cunit 2.1-3_1 >= cunit 2.1-3_1
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: proj 4.9.3_0 exists in the ports tree
DEBUG: proj 4.9.3_0  is the latest installed
DEBUG: proj 4.9.3_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/gis/proj
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! proj 4.9.3_0 >= proj 4.9.3_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: fftw-3 3.3.5_1 exists in the ports tree
DEBUG: fftw-3 3.3.5_1  is the latest installed
DEBUG: fftw-3 3.3.5_1  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/math/fftw-3
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
DEBUG: Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
DEBUG: Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
DEBUG: compiler clang 425.0.28 not blacklisted because it doesn't match {clang <= 211.10.1}
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! fftw-3 3.3.5_1 >= fftw-3 3.3.5_1
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: ecCodes 2.5.0_0 exists in the ports tree
DEBUG: ecCodes 2.5.0_0 +gcc7 is the latest installed
DEBUG: ecCodes 2.5.0_0 +gcc7 is active
DEBUG: Merging existing variants '+gcc7' into variants
DEBUG: new fully merged portvariants: gcc7 +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ecCodes
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for configure.pre_args
DEBUG: Re-registering default for build.dir
DEBUG: Re-registering default for destroot.target
DEBUG: Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
DEBUG: Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Executing variant gcc7 provides gcc7
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! ecCodes 2.5.0_0 >= ecCodes 2.5.0_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: jasper 2.0.14_0 exists in the ports tree
DEBUG: jasper 2.0.14_0  is the latest installed
DEBUG: jasper 2.0.14_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/graphics/jasper
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Re-registering default for configure.dir
DEBUG: Re-registering default for configure.pre_args
DEBUG: Re-registering default for build.dir
DEBUG: Re-registering default for destroot.target
DEBUG: Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! jasper 2.0.14_0 >= jasper 2.0.14_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: jpeg 9b_0 exists in the ports tree
DEBUG: jpeg 9b_0  is the latest installed
DEBUG: jpeg 9b_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/graphics/jpeg
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! jpeg 9b_0 >= jpeg 9b_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: openjpeg15 1.5.2_0 exists in the ports tree
DEBUG: openjpeg15 1.5.2_0  is the latest installed
DEBUG: openjpeg15 1.5.2_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/graphics/openjpeg15
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! openjpeg15 1.5.2_0 >= openjpeg15 1.5.2_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: libpng 1.6.34_0 exists in the ports tree
DEBUG: libpng 1.6.34_0  is the latest installed
DEBUG: libpng 1.6.34_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/graphics/libpng
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libpng 1.6.34_0 >= libpng 1.6.34_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: tiff 4.0.9_0 exists in the ports tree
DEBUG: tiff 4.0.9_0  is the latest installed
DEBUG: tiff 4.0.9_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/graphics/tiff
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! tiff 4.0.9_0 >= tiff 4.0.9_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: lcms2 2.9_0 exists in the ports tree
DEBUG: lcms2 2.9_0  is the latest installed
DEBUG: lcms2 2.9_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/graphics/lcms2
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! lcms2 2.9_0 >= lcms2 2.9_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: jbigkit 2.1_0 exists in the ports tree
DEBUG: jbigkit 2.1_0  is the latest installed
DEBUG: jbigkit 2.1_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/graphics/jbigkit
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! jbigkit 2.1_0 >= jbigkit 2.1_0
DEBUG: epoch: in tree: 2 installed: 2
DEBUG: libgcc 7.2.0_1 exists in the ports tree
DEBUG: libgcc 7.2.0_1  is the latest installed
DEBUG: libgcc 7.2.0_1  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/gcc7
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: compiler llvm-gcc-4.2 2336.11.00 not blacklisted because it doesn't match {llvm-gcc-4.2 < 2336.1}
DEBUG: compiler clang 425.0.28 not blacklisted because it doesn't match {clang < 300}
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libgcc 7.2.0_1 >= libgcc 7.2.0_1
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: cctools 895_4 exists in the ports tree
DEBUG: cctools 895_4 +llvm34 is the latest installed
DEBUG: cctools 895_4 +llvm34 is active
DEBUG: Merging existing variants '+llvm34' into variants
DEBUG: new fully merged portvariants: llvm34 +
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/cctools
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Executing variant llvm34 provides llvm34
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! cctools 895_4 >= cctools 895_4
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: gmp 6.1.2_1 exists in the ports tree
DEBUG: gmp 6.1.2_1  is the latest installed
DEBUG: gmp 6.1.2_1  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/gmp
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! gmp 6.1.2_1 >= gmp 6.1.2_1
DEBUG: epoch: in tree: 2 installed: 2
DEBUG: isl 0.18_0 exists in the ports tree
DEBUG: isl 0.18_0  is the latest installed
DEBUG: isl 0.18_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/isl
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! isl 0.18_0 >= isl 0.18_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: libmpc 1.0.3_0 exists in the ports tree
DEBUG: libmpc 1.0.3_0  is the latest installed
DEBUG: libmpc 1.0.3_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/libmpc
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! libmpc 1.0.3_0 >= libmpc 1.0.3_0
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: mpfr 3.1.6_0 exists in the ports tree
DEBUG: mpfr 3.1.6_0  is the latest installed
DEBUG: mpfr 3.1.6_0  is active
DEBUG: Merging existing variants '' into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/mpfr
DEBUG: OS darwin/11.4.2 (Mac OS X 10.7) arch i386
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
DEBUG: compiler clang 425.0.28 not blacklisted because it doesn't match {clang == 211.10.1}
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies
DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies
DEBUG: No need to upgrade! mpfr 3.1.6_0 >= mpfr 3.1.6_0
--->  Computing dependencies for cdo
DEBUG: cdo has no conflicts
DEBUG: Searching for dependency: clang-5.0
DEBUG: Found Dependency: receipt exists for clang-5.0
DEBUG: Searching for dependency: netcdf
DEBUG: Found Dependency: receipt exists for netcdf
DEBUG: Searching for dependency: hdf5
DEBUG: Found Dependency: receipt exists for hdf5
DEBUG: Searching for dependency: curl
DEBUG: Found Dependency: receipt exists for curl
DEBUG: Searching for dependency: udunits2
DEBUG: Found Dependency: receipt exists for udunits2
DEBUG: Searching for dependency: proj
DEBUG: Found Dependency: receipt exists for proj
DEBUG: Searching for dependency: fftw-3
DEBUG: Found Dependency: receipt exists for fftw-3
DEBUG: Searching for dependency: ecCodes
DEBUG: Found Dependency: receipt exists for ecCodes
DEBUG: Searching for dependency: libgcc
DEBUG: Found Dependency: receipt exists for libgcc
DEBUG: Executing org.macports.main (cdo)
DEBUG: dropping privileges: euid changed to 502, egid changed to 501.
DEBUG: archivefetch phase started at Thu Dec 28 18:41:58 CET 2017
--->  Fetching archive for cdo
DEBUG: Executing proc-pre-org.macports.archivefetch-archivefetch-0
DEBUG: Active variants check for archivefetch-type install considers depends_lib depends_run: netcdf hdf5 curl udunits2 proj fftw-3 ecCodes libgcc
DEBUG: Executing org.macports.archivefetch (cdo)
DEBUG: euid/egid changed to: 0/0
DEBUG: chowned /opt/local/var/macports/incoming to macports
DEBUG: euid/egid changed to: 502/501
--->  cdo-1.9.2_1+eccodes.darwin_11.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
--->  Attempting to fetch cdo-1.9.2_1+eccodes.darwin_11.x86_64.tbz2 from https://packages.macports.org/cdo
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0DEBUG: Fetching archive failed: The requested URL returned error: 404
--->  Attempting to fetch cdo-1.9.2_1+eccodes.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/cdo
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0DEBUG: Fetching archive failed: The requested URL returned error: 404
--->  Attempting to fetch cdo-1.9.2_1+eccodes.darwin_11.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/cdo
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   286  100   286    0     0    459      0 --:--:-- --:--:-- --:--:--   459
  0   286    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0DEBUG: Fetching archive failed: The requested URL returned error: 404
DEBUG: Privilege de-escalation not attempted as not running as root.
DEBUG: fetch phase started at Thu Dec 28 18:42:03 CET 2017
--->  Fetching distfiles for cdo
DEBUG: Executing proc-pre-org.macports.fetch-fetch-0
DEBUG: compilers.enforce_c list: 
DEBUG: compilers.enforce_fortran list: 
DEBUG: compilers.enforce_some_fortran list: 
DEBUG: Executing proc-pre-org.macports.fetch-fetch-1
DEBUG: Executing proc-pre-org.macports.fetch-fetch-2
DEBUG: mpi.enforce_variant list: hdf5
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: , forbidden: 
DEBUG:   accepted
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: mpich, forbidden: 
DEBUG:   rejected, because required variant mpich is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: mpich_devel, forbidden: 
DEBUG:   rejected, because required variant mpich_devel is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: openmpi, forbidden: 
DEBUG:   rejected, because required variant openmpi is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: openmpi_devel, forbidden: 
DEBUG:   rejected, because required variant openmpi_devel is missing
DEBUG: compilers.enforce_c list: hdf5
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: , forbidden: 
DEBUG:   accepted
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang33, forbidden: 
DEBUG:   rejected, because required variant clang33 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang34, forbidden: 
DEBUG:   rejected, because required variant clang34 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang35, forbidden: 
DEBUG:   rejected, because required variant clang35 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang36, forbidden: 
DEBUG:   rejected, because required variant clang36 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang37, forbidden: 
DEBUG:   rejected, because required variant clang37 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang38, forbidden: 
DEBUG:   rejected, because required variant clang38 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang39, forbidden: 
DEBUG:   rejected, because required variant clang39 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang40, forbidden: 
DEBUG:   rejected, because required variant clang40 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: clang50, forbidden: 
DEBUG:   rejected, because required variant clang50 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc44, forbidden: 
DEBUG:   rejected, because required variant gcc44 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc45, forbidden: 
DEBUG:   rejected, because required variant gcc45 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc46, forbidden: 
DEBUG:   rejected, because required variant gcc46 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc47, forbidden: 
DEBUG:   rejected, because required variant gcc47 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc48, forbidden: 
DEBUG:   rejected, because required variant gcc48 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc49, forbidden: 
DEBUG:   rejected, because required variant gcc49 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc5, forbidden: 
DEBUG:   rejected, because required variant gcc5 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc6, forbidden: 
DEBUG:   rejected, because required variant gcc6 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: gcc7, forbidden: 
DEBUG:   rejected, because required variant gcc7 is missing
DEBUG: hdf5 is installed with the following variants: +cxx+hl
DEBUG:   required: llvm, forbidden: 
DEBUG:   rejected, because required variant llvm is missing
DEBUG: Executing org.macports.fetch (cdo)
DEBUG: Privilege de-escalation not attempted as not running as root.
DEBUG: checksum phase started at Thu Dec 28 18:42:03 CET 2017
--->  Verifying checksums for cdo
DEBUG: Executing org.macports.checksum (cdo)
--->  Checksumming cdo-1.9.2.tar.gz
DEBUG: Calculated (rmd160) is 1626ab245e61afb157e975aed64e4c5af99a9877
DEBUG: Correct (rmd160) checksum for cdo-1.9.2.tar.gz
DEBUG: Calculated (sha256) is d1c5092167034a48e4b8ada24cf78a1d4b84e364ffbb08b9ca70d13f428f300c
DEBUG: Correct (sha256) checksum for cdo-1.9.2.tar.gz
DEBUG: Privilege de-escalation not attempted as not running as root.
DEBUG: extract phase started at Thu Dec 28 18:42:03 CET 2017
--->  Extracting cdo
DEBUG: Executing org.macports.extract (cdo)
--->  Extracting cdo-1.9.2.tar.gz
DEBUG: setting option extract.args to '/opt/local/var/macports/distfiles/cdo/cdo-1.9.2.tar.gz'
DEBUG: Environment: 
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
CPATH='/opt/local/include'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.7'
Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/cdo/cdo-1.9.2.tar.gz' | /usr/bin/gnutar --no-same-owner -xf - 
DEBUG: system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/cdo/cdo-1.9.2.tar.gz' | /usr/bin/gnutar --no-same-owner -xf - 
DEBUG: euid/egid changed to: 0/0
DEBUG: chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work to macports
DEBUG: euid/egid changed to: 502/501
DEBUG: Privilege de-escalation not attempted as not running as root.
DEBUG: patch phase started at Thu Dec 28 18:42:04 CET 2017
DEBUG: Executing org.macports.patch (cdo)
DEBUG: Privilege de-escalation not attempted as not running as root.
DEBUG: configure phase started at Thu Dec 28 18:42:04 CET 2017
--->  Configuring cdo
DEBUG: Preferred compilers: clang llvm-gcc-4.2 macports-clang-3.4 macports-llvm-gcc-4.2 apple-gcc-4.2
DEBUG: Using compiler 'MacPorts Clang 5.0'
DEBUG: Executing proc-pre-org.macports.configure-configure-0
DEBUG: Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: netcdf hdf5 curl udunits2 proj fftw-3 ecCodes libgcc clang-5.0
DEBUG: Executing org.macports.configure (cdo)
DEBUG: Environment: 
CC='/opt/local/bin/clang-mp-5.0'
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
CFLAGS='-pipe -Os -arch x86_64'
CPATH='/opt/local/include'
CPPFLAGS='-I/opt/local/include -I/opt/local/include/udunits2'
CXX='/opt/local/bin/clang++-mp-5.0'
CXXFLAGS='-pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64'
F77FLAGS='-m64'
F90FLAGS='-pipe -Os -m64'
FCFLAGS='-pipe -Os -m64'
FFLAGS='-pipe -Os'
INSTALL='/usr/bin/install -c'
LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -lhdf5 -lpng -lopenjpeg -arch x86_64'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.7'
OBJC='/opt/local/bin/clang-mp-5.0'
OBJCFLAGS='-pipe -Os -arch x86_64'
OBJCXX='/opt/local/bin/clang++-mp-5.0'
OBJCXXFLAGS='-pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64'
Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2" && ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-dependency-tracking --disable-openmp --with-proj=/opt/local --with-hdf5=/opt/local --with-udunits2=/opt/local --with-fftw3 --with-curl=/opt/local --with-zlib=/opt/local --with-jasper=/opt/local --with-eccodes=/opt/local 
DEBUG: system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2" && ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-dependency-tracking --disable-openmp --with-proj=/opt/local --with-hdf5=/opt/local --with-udunits2=/opt/local --with-fftw3 --with-curl=/opt/local --with-zlib=/opt/local --with-jasper=/opt/local --with-eccodes=/opt/local 
checking build system type... x86_64-apple-darwin11.4.2
checking host system type... x86_64-apple-darwin11.4.2
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for style of include used by make... GNU
checking for gcc... /opt/local/bin/clang-mp-5.0
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/local/bin/clang-mp-5.0 accepts -g... yes
checking for /opt/local/bin/clang-mp-5.0 option to accept ISO C89... none needed
checking whether /opt/local/bin/clang-mp-5.0 understands -c and -o together... yes
checking dependency style of /opt/local/bin/clang-mp-5.0... none
checking for ar... ar
checking the archiver (ar) interface... ar
configure: setting up libtool
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by /opt/local/bin/clang-mp-5.0... /opt/local/libexec/llvm-5.0/bin/ld
checking if the linker (/opt/local/libexec/llvm-5.0/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm
checking the name lister (/opt/local/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-apple-darwin11.4.2 file names to x86_64-apple-darwin11.4.2 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin11.4.2 file names to toolchain format... func_convert_file_noop
checking for /opt/local/libexec/llvm-5.0/bin/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /opt/local/bin/nm output from /opt/local/bin/clang-mp-5.0 object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking how to run the C preprocessor... /opt/local/bin/clang-mp-5.0 -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if /opt/local/bin/clang-mp-5.0 supports -fno-rtti -fno-exceptions... yes
checking for /opt/local/bin/clang-mp-5.0 option to produce PIC... -fno-common -DPIC
checking if /opt/local/bin/clang-mp-5.0 PIC flag -fno-common -DPIC works... yes
checking if /opt/local/bin/clang-mp-5.0 static flag -static works... no
checking if /opt/local/bin/clang-mp-5.0 supports -c -o file.o... yes
checking if /opt/local/bin/clang-mp-5.0 supports -c -o file.o... (cached) yes
checking whether the /opt/local/bin/clang-mp-5.0 linker (/opt/local/libexec/llvm-5.0/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for bash... /bin/sh
checking for gcc... (cached) /opt/local/bin/clang-mp-5.0
checking for g++... /opt/local/bin/clang++-mp-5.0
checking for /opt/local/bin/clang-mp-5.0 option to accept ISO C99... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether /opt/local/bin/clang++-mp-5.0 accepts -g... yes
checking dependency style of /opt/local/bin/clang++-mp-5.0... none
checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-5.0 -E
checking for ld used by /opt/local/bin/clang++-mp-5.0... /opt/local/libexec/llvm-5.0/bin/ld
checking if the linker (/opt/local/libexec/llvm-5.0/bin/ld) is GNU ld... no
checking whether the /opt/local/bin/clang++-mp-5.0 linker (/opt/local/libexec/llvm-5.0/bin/ld) supports shared libraries... yes
checking for /opt/local/bin/clang++-mp-5.0 option to produce PIC... -fno-common -DPIC
checking if /opt/local/bin/clang++-mp-5.0 PIC flag -fno-common -DPIC works... yes
checking if /opt/local/bin/clang++-mp-5.0 static flag -static works... no
checking if /opt/local/bin/clang++-mp-5.0 supports -c -o file.o... yes
checking if /opt/local/bin/clang++-mp-5.0 supports -c -o file.o... (cached) yes
checking whether the /opt/local/bin/clang++-mp-5.0 linker (/opt/local/libexec/llvm-5.0/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... no
checking for g95... no
checking for xlf95... no
checking for f95... no
checking for fort... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgfortran... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking whether we are using the GNU Fortran 77 compiler... no
checking whether  accepts -g... no
checking for C/C++ restrict keyword... __restrict
checking whether /opt/local/bin/clang++-mp-5.0 supports C++11 features by default... no
checking whether /opt/local/bin/clang++-mp-5.0 supports C++11 features with -std=gnu++11... yes
checking for ar... (cached) ar
checking for ld... /opt/local/libexec/llvm-5.0/bin/ld
checking for nm... /opt/local/bin/nm
checking for ar... (cached) ar
checking for as... as
checking for dlltool... false
checking for objdump... false
checking for strip... (cached) strip
checking for ranlib... (cached) ranlib
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for malloc in -lmalloc... no
checking for struct stat.st_blksize... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking malloc.h usability... no
checking malloc.h presence... no
checking for malloc.h... no
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking fnmatch.h usability... yes
checking fnmatch.h presence... yes
checking for fnmatch.h... yes
checking wordexp.h usability... yes
checking wordexp.h presence... yes
checking for wordexp.h... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking for mallinfo... no
checking for backtrace... yes
checking for getrlimit... yes
checking for gethostname... yes
checking for floor in -lm... yes
checking whether isnan is declared... yes
checking for sqrtl... yes
checking for feenableexcept... no
checking for fenv_t.__control... yes
checking for fenv_t.__mxcsr... yes
checking C preprocessor flags for Fortran calling convention cfortran.h...  (probed)
checking for nearpt3 support... 
checking for DATA support... 
checking if compiler needs -Werror to reject unknown flags... yes
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... -D_THREAD_SAFE
checking for PTHREAD_PRIO_INHERIT... yes
CC:/opt/local/bin/clang-mp-5.0 CFLAGS:-pipe -Os -arch x86_64  -D_THREAD_SAFE -pthread LIBS: -lm 
checking for szlib library... suppressed
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for library containing H5Fopen... none required
checking for library containing H5DSis_scale... -lhdf5_hl
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking for library containing nc_open... -lnetcdf
checking nc-config script... checking for nc-config... /opt/local/bin/nc-config
checking netcdf's OpenDAP support... yes
checking netcdf's nc2 support... yes
checking netcdf's nc4 support... yes
checking netcdf's nc4/hdf5 support... yes
checking for library containing H5TS_mutex_lock... no
checking udunits2.h usability... yes
checking udunits2.h presence... yes
checking for udunits2.h... yes
checking udunits2/udunits2.h usability... yes
checking udunits2/udunits2.h presence... yes
checking for udunits2/udunits2.h... yes
checking for library containing ut_parse... -ludunits2
checking for the CMOR library... suppressed
checking grib_api.h usability... yes
checking grib_api.h presence... yes
checking for grib_api.h... yes
checking for library containing grib_get_message... -leccodes
checking for the GRIB_API library... suppressed
checking for GRIB support... yes
checking for CGRIBEX support... yes
checking for SERVICE support... yes
checking for EXTRA support... yes
checking for IEG support... yes
checking for FFTW3 support... checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking for library containing fftw_cleanup... -lfftw3
checking proj_api.h usability... yes
checking proj_api.h presence... yes
checking for proj_api.h... yes
checking for library containing pj_init... -lproj
checking curl/curl.h usability... yes
checking curl/curl.h presence... yes
checking for curl/curl.h... yes
checking for library containing curl_global_init... -lcurl
checking for MAGICS library... suppressed
checking for XML2 library... suppressed
checking for build a separate CDI library and link CDO to it... no
checking for building an additional static CDO binary... no
checking for HIRLAM extensions... no
checking if x86/amd64 assembler speaks SSE4.2... yes
checking if x86/amd64 assembler speaks AVX... yes
checking if x86/amd64 assembler speaks AVX2... yes
checking for gawk... (cached) gawk
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating test/File.test
config.status: creating test/Read_grib.test
config.status: creating test/Read_netcdf.test
config.status: creating test/Copy_netcdf.test
config.status: creating test/Comp.test
config.status: creating test/Compc.test
config.status: creating test/Cat.test
config.status: creating test/Gridarea.test
config.status: creating test/Genweights.test
config.status: creating test/Remap.test
config.status: creating test/Remap2.test
config.status: creating test/Remapeta.test
config.status: creating test/EOF.test
config.status: creating test/Select.test
config.status: creating test/Spectral.test
config.status: creating test/Vertint.test
config.status: creating test/Timstat.test
config.status: creating test/Timselstat.test
config.status: creating test/Seasstat.test
config.status: creating test/Runstat.test
config.status: creating test/Multiyearstat.test
config.status: creating test/Ydrunstat.test
config.status: creating test/Gridboxstat.test
config.status: creating test/Vertstat.test
config.status: creating test/Fldstat.test
config.status: creating test/Fldpctl.test
config.status: creating test/Ensstat.test
config.status: creating test/Enspctl.test
config.status: creating test/Merstat.test
config.status: creating test/Zonstat.test
config.status: creating test/Mergetime.test
config.status: creating test/Afterburner.test
config.status: creating test/Detrend.test
config.status: creating test/Arithc.test
config.status: creating test/Arith.test
config.status: creating test/Expr.test
config.status: creating test/Gradsdes.test
config.status: creating test/Collgrid.test
config.status: creating test/threads.test
config.status: creating test/tsformat.test
config.status: creating test/wildcard.test
config.status: creating test/MapReduce.test
config.status: creating test/Ninfo.test
config.status: creating Makefile
config.status: creating src/lib/ncl/Makefile
config.status: creating src/Makefile
config.status: creating contrib/Makefile
config.status: creating test/Makefile
config.status: creating test/data/Makefile
config.status: creating cdo.spec
config.status: creating cdo.settings
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in libcdi (/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2/libcdi)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/opt/local'  '--with-netcdf=/opt/local' '--disable-dependency-tracking' '--disable-openmp' '--with-proj=/opt/local' '--with-hdf5=/opt/local' '--with-udunits2=/opt/local' '--with-fftw3' '--with-curl=/opt/local' '--with-zlib=/opt/local' '--with-jasper=/opt/local' '--with-eccodes=/opt/local' 'CC=/opt/local/bin/clang-mp-5.0' 'CFLAGS=-pipe -Os -arch x86_64' 'LDFLAGS=-L/opt/local/lib -Wl,-headerpad_max_install_names -lhdf5 -lpng -lopenjpeg -arch x86_64' 'CPPFLAGS=-I/opt/local/include -I/opt/local/include/udunits2' 'CXX=/opt/local/bin/clang++-mp-5.0' 'CXXFLAGS=-pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64' 'FFLAGS=-pipe -Os' --cache-file=/dev/null --srcdir=.
configuring cdi 1.9.2
checking build system type... x86_64-apple-darwin11.4.2
checking host system type... x86_64-apple-darwin11.4.2
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for gcc... /opt/local/bin/clang-mp-5.0
checking for style of include used by make... GNU
checking for gcc... (cached) /opt/local/bin/clang-mp-5.0
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/local/bin/clang-mp-5.0 accepts -g... yes
checking for /opt/local/bin/clang-mp-5.0 option to accept ISO C89... none needed
checking whether /opt/local/bin/clang-mp-5.0 understands -c and -o together... yes
checking dependency style of /opt/local/bin/clang-mp-5.0... none
checking for /opt/local/bin/clang-mp-5.0 option to accept ISO C99... none needed
checking For conformance to POSIX.1-2001.... yes
checking for C/C++ restrict keyword... __restrict
checking whether we are using the GNU Fortran compiler... no
checking whether no accepts -g... no
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... no
checking for g95... no
checking for xlf95... no
checking for f95... no
checking for fort... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgfortran... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking whether we are using the GNU Fortran 77 compiler... no
checking whether  accepts -g... no
checking whether we are using the GNU C++ compiler... yes
checking whether /opt/local/bin/clang++-mp-5.0 accepts -g... yes
checking dependency style of /opt/local/bin/clang++-mp-5.0... none
configure: setting up libtool
checking any compiler has problems building shared objects... no
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by /opt/local/bin/clang-mp-5.0... /opt/local/libexec/llvm-5.0/bin/ld
checking if the linker (/opt/local/libexec/llvm-5.0/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm
checking the name lister (/opt/local/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-apple-darwin11.4.2 file names to x86_64-apple-darwin11.4.2 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin11.4.2 file names to toolchain format... func_convert_file_noop
checking for /opt/local/libexec/llvm-5.0/bin/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /opt/local/bin/nm output from /opt/local/bin/clang-mp-5.0 object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking how to run the C preprocessor... /opt/local/bin/clang-mp-5.0 -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if /opt/local/bin/clang-mp-5.0 supports -fno-rtti -fno-exceptions... yes
checking for /opt/local/bin/clang-mp-5.0 option to produce PIC... -fno-common -DPIC
checking if /opt/local/bin/clang-mp-5.0 PIC flag -fno-common -DPIC works... yes
checking if /opt/local/bin/clang-mp-5.0 static flag -static works... no
checking if /opt/local/bin/clang-mp-5.0 supports -c -o file.o... yes
checking if /opt/local/bin/clang-mp-5.0 supports -c -o file.o... (cached) yes
checking whether the /opt/local/bin/clang-mp-5.0 linker (/opt/local/libexec/llvm-5.0/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-5.0 -E
checking for ld used by /opt/local/bin/clang++-mp-5.0... /opt/local/libexec/llvm-5.0/bin/ld
checking if the linker (/opt/local/libexec/llvm-5.0/bin/ld) is GNU ld... no
checking whether the /opt/local/bin/clang++-mp-5.0 linker (/opt/local/libexec/llvm-5.0/bin/ld) supports shared libraries... yes
checking for /opt/local/bin/clang++-mp-5.0 option to produce PIC... -fno-common -DPIC
checking if /opt/local/bin/clang++-mp-5.0 PIC flag -fno-common -DPIC works... yes
checking if /opt/local/bin/clang++-mp-5.0 static flag -static works... no
checking if /opt/local/bin/clang++-mp-5.0 supports -c -o file.o... yes
checking if /opt/local/bin/clang++-mp-5.0 supports -c -o file.o... (cached) yes
checking whether the /opt/local/bin/clang++-mp-5.0 linker (/opt/local/libexec/llvm-5.0/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
configure: creating ./config.lt
config.lt: creating libtool
checking whether byte ordering is bigendian... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for malloc in -lmalloc... no
checking for struct stat.st_blksize... yes
checking malloc.h usability... no
checking malloc.h presence... no
checking for malloc.h... no
checking uuid.h usability... no
checking uuid.h presence... no
checking for uuid.h... no
checking uuid/uuid.h usability... yes
checking uuid/uuid.h presence... yes
checking for uuid/uuid.h... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking size parameter type for backtrace()... int
checking for library containing backtrace... none required
checking for mallinfo... no
checking for getline... yes
checking for uuid_generate in -luuid... no
checking for uuid_create... no
checking whether isnan is declared... yes
checking whether _SC_LARGE_PAGESIZE is declared... no
checking whether PAGESIZE is declared... no
checking whether PAGE_SIZE is declared... no
checking whether _SC_PAGE_SIZE is declared... yes
checking whether _SC_PAGESIZE is declared... yes
checking whether _PC_REC_XFER_ALIGN is declared... yes
checking whether POSIX_REC_XFER_ALIGN is declared... no
checking whether __builtin_ctz is declared... yes
checking for floor in -lm... yes
checking if compiler needs -Werror to reject unknown flags... yes
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... -D_THREAD_SAFE
checking for PTHREAD_PRIO_INHERIT... yes
CC:/opt/local/bin/clang-mp-5.0 CFLAGS:-pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread LIBS: -lm 
checking for szlib library... suppressed
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking for library containing nc_open... -lnetcdf
checking nc-config script... checking for nc-config... /opt/local/bin/nc-config
checking netcdf's OpenDAP support... yes
checking netcdf's nc2 support... yes
checking netcdf's nc4 support... yes
checking netcdf's nc4/hdf5 support... yes
checking for library containing H5TS_mutex_lock... no
checking for library containing H5get_libversion... none required
checking grib_api.h usability... yes
checking grib_api.h presence... yes
checking for grib_api.h... yes
checking for library containing grib_get_message... -leccodes
checking for the GRIB_API library... suppressed
checking for GRIB support... yes
checking for CGRIBEX support... yes
checking for SERVICE support... yes
checking for EXTRA support... yes
checking for IEG support... yes
checking for building an additional static CDI binary... no
checking for HIRLAM extensions... no
checking for grib_get_length... yes
checking for pkg-config... /opt/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for ruby... ruby
checking C preprocessor flags for Fortran calling convention cfortran.h...  (probed)
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating tests/test_cksum_grib
config.status: creating tests/test_cksum_nc
config.status: creating tests/test_cksum_nc2
config.status: creating tests/test_cksum_nc4
config.status: creating tests/test_cksum_extra
config.status: creating tests/test_cksum_service
config.status: creating tests/test_cksum_ieg
config.status: creating tests/test_chunk_cksum
config.status: creating tests/test_f2003
config.status: creating tests/pio_write_run
config.status: creating tests/pio_write_deco2d_run
config.status: creating tests/pio_cksum_mpinonb
config.status: creating tests/pio_cksum_mpi_fw_ordered
config.status: creating tests/pio_cksum_mpi_fw_at_all
config.status: creating tests/pio_cksum_mpi_fw_at_reblock
config.status: creating tests/pio_cksum_fpguard
config.status: creating tests/pio_cksum_asynch
config.status: creating tests/pio_cksum_writer
config.status: creating tests/pio_cksum_cdf
config.status: creating tests/test_resource_copy_mpi_run
config.status: creating tests/test_cdf_transformation
config.status: creating tests/test_cdf_const
config.status: creating tables/gen_tableheaderfile
config.status: creating util/serialrun
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating interfaces/Makefile
config.status: creating app/Makefile
config.status: creating tests/Makefile
config.status: creating examples/Makefile
config.status: creating cdi.settings
config.status: creating examples/pio/Makefile
config.status: creating src/pkgconfig/cdi.pc
config.status: creating src/pkgconfig/cdipio.pc
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: CDI is configured with the following options:
config.status: creating cdi.settings
{
  "build" : {
    "tools" : {
      "CC"       : "/opt/local/bin/clang-mp-5.0",
      "CPP"      : "/opt/local/bin/clang-mp-5.0 -E",
      "CPPFLAGS" : "-I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 ",
      "CFLAGS"   : "-pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread",
      "LDFLAGS"  : "-L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -Wl,-headerpad_max_install_names -lhdf5 -lpng -lopenjpeg -arch x86_64",
      "LIBS"     : "-leccodes -lnetcdf  -lm ",
      "FC"       : "no",
      "F77"      : "",
      "FCFLAGS"  : "-pipe -Os -m64",
      "LD"       : "/opt/local/libexec/llvm-5.0/bin/ld",
      "NM"       : "/opt/local/bin/nm",
      "AR"       : "ar",
      "AS"       : "@AS@",
      "DLLTOOL"  : "false",
      "OBJDUMP"  : "false",
      "STRIP"    : "strip",
      "RANLIB"   : "ranlib",
      "INSTALL"  : "/usr/bin/install -c"
    },
    "libraries" : {
      "threads"    : {
        "lib"      : "",
        "include"  : ""
      },
      "mpi"        : {
        "libs"     : "",
        "cflags"   : "",
        "fclibs"   : "",
        "fcflags"  : ""
      },
      "szlib"    : {
        "lib"      : "",
        "include"  : ""
      },
      "netcdf"   : {
        "lib"      : " -L/opt/local/lib -lnetcdf",
        "include"  : " -I/opt/local/include"
      },
      "grib_api" : {
        "lib"      : "",
        "include"  : ""
      }
      "eccodes" : {
        "lib"      : " -L/opt/local/lib -leccodes",
        "include"  : " -I/opt/local/include"
      }
    }
    "platform" : {
      "USER_NAME"   : "root",
      "HOST_NAME"   : "Sibylles-MacBook-Air.local",
      "SYSTEM_TYPE" : "x86_64-apple-darwin11.4.2"
    },
  },
  "features" : {
    "enable_cdi_lib" : false,
    "grib"           : "yes",
    "cgribex"        : "yes",
    "service"        : "yes",
    "extra"          : "yes",
    "ieg"            : "yes",
    "enable_mpi"     : false,
    "parallel_nc4"   : 0,
    "enable_python"  : false,
    "enable_ruby"    : false
  }
}
configure:

  Configuration completed.

    You can now say 'make' to compile the CDI package and 'make install' to install it afterwards.

configure: CDO is configured with the following options:
{
  "build" : {
    "tools" : {
      "CXX"                : "/opt/local/bin/clang++-mp-5.0 -std=gnu++11",
      "CC"                 : "/opt/local/bin/clang-mp-5.0",
      "CPP"                : "/opt/local/bin/clang-mp-5.0 -E",
      "CPPFLAGS"           : "-I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2",
      "CXXFLAGS"           : "-pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread",
      "CFLAGS"             : "-pipe -Os -arch x86_64  -D_THREAD_SAFE -pthread",
      "F77"                : "",
      "FFLAGS"             : "-pipe -Os",
      "LDFLAGS"            : "-L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -Wl,-headerpad_max_install_names -lhdf5 -lpng -lopenjpeg -arch x86_64 -L/opt/local/lib",
      "LIBS"               : "-lcurl -lproj -lfftw3 -leccodes -ludunits2 -lnetcdf -lhdf5_hl  -lm ",
      "FCFLAGS"            : "@FCFLAGS@",
      "INCLUDES"           : "@INCLUDES@",
      "LD"                 : "/opt/local/libexec/llvm-5.0/bin/ld",
      "NM"                 : "/opt/local/bin/nm",
      "AR"                 : "ar",
      "AS"                 : "as",
      "DLLTOOL"            : "false",
      "OBJDUMP"            : "false",
      "STRIP"              : "strip",
      "RANLIB"             : "ranlib",
      "INSTALL"            : "/usr/bin/install -c",
    },
    "libraries" : {
      "threads"    : {
        "lib"      : "",
        "include"  : ""
      },
      "szlib"      : {
        "lib"      : "",
        "include"  : ""
      },
      "hdf5"       : {
        "lib"      : " -L/opt/local/lib -lhdf5",
        "include"  : " -I/opt/local/include"
      },
      "netcdf"     : {
        "lib"      : " -L/opt/local/lib -lnetcdf",
        "include"  : " -I/opt/local/include"
      },
      "udunits2"   : {
        "lib"      : " -L/opt/local/lib -ludunits2",
        "include"  : " -I/opt/local/include"
      },
      "proj"       : {
        "lib"      : " -L/opt/local/lib -lproj",
        "include"  : " -I/opt/local/include"
      },
      "magics"       : {
        "lib"      : "",
        "include"  : ""
      }
    },
    "platform" : {
      "USER_NAME"   : "root",
      "HOST_NAME"   : "Sibylles-MacBook-Air.local",
      "SYSTEM_TYPE" : "x86_64-apple-darwin11.4.2"
    },
  },
  "features" : {
    "enable_cdi_lib" : false,
    "enable_data"    : true,
    "enable_fortran" : true,
    "fortran_works"  : "yes",
  }
}
configure:

  Configuration completed.

    You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.

DEBUG: Privilege de-escalation not attempted as not running as root.
DEBUG: build phase started at Thu Dec 28 18:42:56 CET 2017
--->  Building cdo
DEBUG: Executing org.macports.build (cdo)
DEBUG: Environment: 
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
CPATH='/opt/local/include'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.7'
Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2" && /usr/bin/make -j4 -w all 
DEBUG: system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2" && /usr/bin/make -j4 -w all 
make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2'
Making all in libcdi
make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2/libcdi'
Making all in src
make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2/libcdi/src'
/usr/bin/make  all-am
make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2/libcdi/src'
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o resource_unpack.lo resource_unpack.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o basetime.lo basetime.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o binary.lo binary.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o calendar.lo calendar.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c basetime.c  -fno-common -DPIC -o .libs/basetime.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c resource_unpack.c  -fno-common -DPIC -o .libs/resource_unpack.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c calendar.c  -fno-common -DPIC -o .libs/calendar.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c binary.c  -fno-common -DPIC -o .libs/binary.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c basetime.c -o basetime.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c calendar.c -o calendar.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c binary.c -o binary.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c resource_unpack.c -o resource_unpack.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdf.lo cdf.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf.c  -fno-common -DPIC -o .libs/cdf.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdf_int.lo cdf_int.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdf_util.lo cdf_util.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_int.c  -fno-common -DPIC -o .libs/cdf_int.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdi_error.lo cdi_error.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_util.c  -fno-common -DPIC -o .libs/cdf_util.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_error.c  -fno-common -DPIC -o .libs/cdi_error.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf.c -o cdf.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_error.c -o cdi_error.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdi_util.lo cdi_util.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cgribexlib.lo cgribexlib.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_util.c  -fno-common -DPIC -o .libs/cdi_util.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_util.c -o cdf_util.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cgribexlib.c  -fno-common -DPIC -o .libs/cgribexlib.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_util.c -o cdi_util.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o dmemory.lo dmemory.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_int.c -o cdf_int.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c dmemory.c  -fno-common -DPIC -o .libs/dmemory.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cksum.lo cksum.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cksum.c  -fno-common -DPIC -o .libs/cksum.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cksum.c -o cksum.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c dmemory.c -o dmemory.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdi_cksum.lo cdi_cksum.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_cksum.c  -fno-common -DPIC -o .libs/cdi_cksum.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_cksum.c -o cdi_cksum.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o error.lo error.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o extralib.lo extralib.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o file.lo file.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c error.c  -fno-common -DPIC -o .libs/error.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c extralib.c  -fno-common -DPIC -o .libs/extralib.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c file.c  -fno-common -DPIC -o .libs/file.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c error.c -o error.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o gaussgrid.lo gaussgrid.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c gaussgrid.c  -fno-common -DPIC -o .libs/gaussgrid.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c extralib.c -o extralib.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c gaussgrid.c -o gaussgrid.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c file.c -o file.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o gribapi.lo gribapi.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c gribapi.c  -fno-common -DPIC -o .libs/gribapi.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c gribapi.c -o gribapi.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o grid.lo grid.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c grid.c  -fno-common -DPIC -o .libs/grid.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o ieglib.lo ieglib.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c ieglib.c  -fno-common -DPIC -o .libs/ieglib.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o input_file.lo input_file.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c input_file.c  -fno-common -DPIC -o .libs/input_file.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c ieglib.c -o ieglib.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c input_file.c -o input_file.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o institution.lo institution.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c institution.c  -fno-common -DPIC -o .libs/institution.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o model.lo model.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c model.c  -fno-common -DPIC -o .libs/model.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c institution.c -o institution.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c model.c -o model.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o namespace.lo namespace.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c namespace.c  -fno-common -DPIC -o .libs/namespace.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o serialize.lo serialize.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c serialize.c  -fno-common -DPIC -o .libs/serialize.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c namespace.c -o namespace.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c serialize.c -o serialize.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o referenceCounting.lo referenceCounting.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c referenceCounting.c  -fno-common -DPIC -o .libs/referenceCounting.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o resource_handle.lo resource_handle.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c resource_handle.c  -fno-common -DPIC -o .libs/resource_handle.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c referenceCounting.c -o referenceCounting.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o servicelib.lo servicelib.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c servicelib.c  -fno-common -DPIC -o .libs/servicelib.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c servicelib.c -o servicelib.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c resource_handle.c -o resource_handle.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c grid.c -o grid.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_cdf_i.lo stream_cdf_i.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_cdf_i.c  -fno-common -DPIC -o .libs/stream_cdf_i.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_cdf_o.lo stream_cdf_o.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_cdf_o.c  -fno-common -DPIC -o .libs/stream_cdf_o.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cgribexlib.c -o cgribexlib.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_cdf_o.c -o stream_cdf_o.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_cdf_time.lo stream_cdf_time.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_cdf_time.c  -fno-common -DPIC -o .libs/stream_cdf_time.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_cdf_time.c -o stream_cdf_time.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_cgribex.lo stream_cgribex.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_cgribex.c  -fno-common -DPIC -o .libs/stream_cgribex.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_ext.lo stream_ext.c
stream_cgribex.c:194:22: warning: taking the absolute value of unsigned type 'unsigned long' has no effect [-Wabsolute-value]
                if ( abs(ISEC2_LastLon - (ISEC2_FirstLon+ISEC2_LonIncr*(grid->x.size-1))) <= 2 )
                     ^
stream_cgribex.c:194:22: note: remove the call to 'abs' since unsigned values cannot be negative
                if ( abs(ISEC2_LastLon - (ISEC2_FirstLon+ISEC2_LonIncr*(grid->x.size-1))) <= 2 )
                     ^~~
stream_cgribex.c:227:22: warning: taking the absolute value of unsigned type 'unsigned long' has no effect [-Wabsolute-value]
                if ( abs(ISEC2_LastLat - (ISEC2_FirstLat+ISEC2_LatIncr*(grid->y.size-1))) <= 2 )
                     ^
stream_cgribex.c:227:22: note: remove the call to 'abs' since unsigned values cannot be negative
                if ( abs(ISEC2_LastLat - (ISEC2_FirstLat+ISEC2_LatIncr*(grid->y.size-1))) <= 2 )
                     ^~~
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_ext.c  -fno-common -DPIC -o .libs/stream_ext.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_ext.c -o stream_ext.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_cdf_i.c -o stream_cdf_i.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_grb.lo stream_grb.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_grb.c  -fno-common -DPIC -o .libs/stream_grb.o
2 warnings generated.
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_cgribex.c -o stream_cgribex.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_grb.c -o stream_grb.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_history.lo stream_history.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_history.c  -fno-common -DPIC -o .libs/stream_history.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_history.c -o stream_history.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_ieg.lo stream_ieg.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_ieg.c  -fno-common -DPIC -o .libs/stream_ieg.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdi_int.lo cdi_int.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_int.c  -fno-common -DPIC -o .libs/cdi_int.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_ieg.c -o stream_ieg.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_int.c -o cdi_int.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_record.lo stream_record.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_record.c  -fno-common -DPIC -o .libs/stream_record.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_srv.lo stream_srv.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_srv.c  -fno-common -DPIC -o .libs/stream_srv.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_record.c -o stream_record.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_var.lo stream_var.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o grb_write.lo grb_write.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_var.c  -fno-common -DPIC -o .libs/stream_var.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c grb_write.c  -fno-common -DPIC -o .libs/grb_write.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_var.c -o stream_var.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_srv.c -o stream_srv.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c grb_write.c -o grb_write.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o grb_read.lo grb_read.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c grb_read.c  -fno-common -DPIC -o .libs/grb_read.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdf_write.lo cdf_write.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_write.c  -fno-common -DPIC -o .libs/cdf_write.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c grb_read.c -o grb_read.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdf_read.lo cdf_read.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_read.c  -fno-common -DPIC -o .libs/cdf_read.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdf_lazy_grid.lo cdf_lazy_grid.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_lazy_grid.c  -fno-common -DPIC -o .libs/cdf_lazy_grid.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o subtype.lo subtype.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c subtype.c  -fno-common -DPIC -o .libs/subtype.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_lazy_grid.c -o cdf_lazy_grid.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_read.c -o cdf_read.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdf_write.c -o cdf_write.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c subtype.c -o subtype.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o table.lo table.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c table.c  -fno-common -DPIC -o .libs/table.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o taxis.lo taxis.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o timebase.lo timebase.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c taxis.c  -fno-common -DPIC -o .libs/taxis.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c timebase.c  -fno-common -DPIC -o .libs/timebase.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c timebase.c -o timebase.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o tsteps.lo tsteps.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c tsteps.c  -fno-common -DPIC -o .libs/tsteps.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o util.lo util.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c tsteps.c -o tsteps.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c util.c  -fno-common -DPIC -o .libs/util.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c table.c -o table.o >/dev/null 2>&1
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libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c util.c -o util.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c varscan.c  -fno-common -DPIC -o .libs/varscan.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c taxis.c -o taxis.o >/dev/null 2>&1
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libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c version.c  -fno-common -DPIC -o .libs/version.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c version.c -o version.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o vlist.lo vlist.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c vlist.c  -fno-common -DPIC -o .libs/vlist.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o cdi_att.lo cdi_att.c
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o vlist_var.lo vlist_var.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c vlist_var.c  -fno-common -DPIC -o .libs/vlist_var.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_att.c  -fno-common -DPIC -o .libs/cdi_att.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c varscan.c -o varscan.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c cdi_att.c -o cdi_att.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c vlist.c -o vlist.o >/dev/null 2>&1
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libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c zaxis.c  -fno-common -DPIC -o .libs/zaxis.o
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libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream.c  -fno-common -DPIC -o .libs/stream.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c vlist_var.c -o vlist_var.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream.c -o stream.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_write.lo stream_write.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_write.c  -fno-common -DPIC -o .libs/stream_write.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c zaxis.c -o zaxis.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_write.c -o stream_write.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_read.lo stream_read.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_read.c  -fno-common -DPIC -o .libs/stream_read.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o swap.lo swap.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c swap.c  -fno-common -DPIC -o .libs/swap.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c swap.c -o swap.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o iterator.lo iterator.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c iterator.c  -fno-common -DPIC -o .libs/iterator.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_read.c -o stream_read.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o iterator_fallback.lo iterator_fallback.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c iterator_fallback.c  -fno-common -DPIC -o .libs/iterator_fallback.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o iterator_grib.lo iterator_grib.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c iterator_grib.c  -fno-common -DPIC -o .libs/iterator_grib.o
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o gribapi_utilities.lo gribapi_utilities.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c iterator_fallback.c -o iterator_fallback.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c gribapi_utilities.c  -fno-common -DPIC -o .libs/gribapi_utilities.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c iterator.c -o iterator.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.   -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2     -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c -o stream_gribapi.lo stream_gribapi.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_gribapi.c  -fno-common -DPIC -o .libs/stream_gribapi.o
/bin/sh ../libtool  --tag=CC   --mode=link /opt/local/bin/clang-mp-5.0    -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread  -L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -Wl,-headerpad_max_install_names -lhdf5 -lpng -lopenjpeg -arch x86_64 -o libcdiresunpack.la  resource_unpack.lo  -leccodes -lnetcdf  -lm 
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c iterator_grib.c -o iterator_grib.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c gribapi_utilities.c -o gribapi_utilities.o >/dev/null 2>&1
libtool: link: ar cru .libs/libcdiresunpack.a .libs/resource_unpack.o 
libtool: link: ranlib .libs/libcdiresunpack.a
libtool: link: ( cd ".libs" && rm -f "libcdiresunpack.la" && ln -s "../libcdiresunpack.la" "libcdiresunpack.la" )
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c stream_gribapi.c -o stream_gribapi.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=link /opt/local/bin/clang-mp-5.0    -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread  -L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -Wl,-headerpad_max_install_names -lhdf5 -lpng -lopenjpeg -arch x86_64 -o libcdi.la  basetime.lo binary.lo calendar.lo cdf.lo cdf_int.lo cdf_util.lo cdi_error.lo cdi_util.lo cgribexlib.lo dmemory.lo cksum.lo cdi_cksum.lo error.lo extralib.lo file.lo gaussgrid.lo gribapi.lo grid.lo ieglib.lo input_file.lo institution.lo model.lo namespace.lo serialize.lo referenceCounting.lo resource_handle.lo servicelib.lo stream_cdf_i.lo stream_cdf_o.lo stream_cdf_time.lo stream_cgribex.lo stream_ext.lo stream_grb.lo stream_history.lo stream_ieg.lo cdi_int.lo stream_record.lo stream_srv.lo stream_var.lo grb_write.lo grb_read.lo cdf_write.lo cdf_read.lo cdf_lazy_grid.lo subtype.lo table.lo taxis.lo timebase.lo tsteps.lo util.lo varscan.lo version.lo vlist.lo cdi_att.lo vlist_var.lo zaxis.lo stream.lo stream_write.lo stream_read.lo swap.lo iterator.lo iterator_fallback.lo iterator_grib.lo  gribapi_utilities.lo stream_gribapi.lo  -leccodes -lnetcdf  -lm 
libtool: link: ar cru .libs/libcdi.a .libs/basetime.o .libs/binary.o .libs/calendar.o .libs/cdf.o .libs/cdf_int.o .libs/cdf_util.o .libs/cdi_error.o .libs/cdi_util.o .libs/cgribexlib.o .libs/dmemory.o .libs/cksum.o .libs/cdi_cksum.o .libs/error.o .libs/extralib.o .libs/file.o .libs/gaussgrid.o .libs/gribapi.o .libs/grid.o .libs/ieglib.o .libs/input_file.o .libs/institution.o .libs/model.o .libs/namespace.o .libs/serialize.o .libs/referenceCounting.o .libs/resource_handle.o .libs/servicelib.o .libs/stream_cdf_i.o .libs/stream_cdf_o.o .libs/stream_cdf_time.o .libs/stream_cgribex.o .libs/stream_ext.o .libs/stream_grb.o .libs/stream_history.o .libs/stream_ieg.o .libs/cdi_int.o .libs/stream_record.o .libs/stream_srv.o .libs/stream_var.o .libs/grb_write.o .libs/grb_read.o .libs/cdf_write.o .libs/cdf_read.o .libs/cdf_lazy_grid.o .libs/subtype.o .libs/table.o .libs/taxis.o .libs/timebase.o .libs/tsteps.o .libs/util.o .libs/varscan.o .libs/version.o .libs/vlist.o .libs/cdi_att.o .libs/vlist_var.o .libs/zaxis.o .libs/stream.o .libs/stream_write.o .libs/stream_read.o .libs/swap.o .libs/iterator.o .libs/iterator_fallback.o .libs/iterator_grib.o .libs/gribapi_utilities.o .libs/stream_gribapi.o 
libtool: link: ranlib .libs/libcdi.a
libtool: link: ( cd ".libs" && rm -f "libcdi.la" && ln -s "../libcdi.la" "libcdi.la" )
make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2/libcdi/src'
make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2/libcdi/src'
Making all in interfaces
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make[2]: Nothing to be done for `all'.
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Making all in app
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libtool: link: /opt/local/bin/clang-mp-5.0 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -Wl,-headerpad_max_install_names -arch x86_64 -o createtable createtable.o  -L/opt/local/lib ../src/.libs/libcdi.a /opt/local/lib/libhdf5.dylib /opt/local/lib/libpng16.dylib /opt/local/lib/libopenjpeg.dylib -leccodes -lnetcdf -lm -pthread
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libtool: link: /opt/local/bin/clang-mp-5.0 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -Wl,-headerpad_max_install_names -arch x86_64 -o cdi cdi.o  -L/opt/local/lib ../src/.libs/libcdi.a /opt/local/lib/libhdf5.dylib /opt/local/lib/libpng16.dylib /opt/local/lib/libopenjpeg.dylib -leccodes -lnetcdf -lm -pthread
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Making all in examples
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libtool: link: /opt/local/bin/clang-mp-5.0 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -Wl,-headerpad_max_install_names -arch x86_64 -o cdi_copy cdi_copy.o  -L/opt/local/lib ../src/.libs/libcdi.a /opt/local/lib/libhdf5.dylib /opt/local/lib/libpng16.dylib /opt/local/lib/libopenjpeg.dylib -leccodes -lnetcdf -lm -pthread
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Making all in examples/pio
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libtool: link: /opt/local/bin/clang-mp-5.0 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -Wl,-headerpad_max_install_names -arch x86_64 -o collectData collectData.o  -L/opt/local/lib ../../src/.libs/libcdi.a /opt/local/lib/libhdf5.dylib /opt/local/lib/libpng16.dylib /opt/local/lib/libopenjpeg.dylib -leccodes -lnetcdf -lm -pthread
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Making all in tests
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Making all in src/lib/ncl
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Making all in src
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libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_pthread.cc -o libcdo_la-cdo_pthread.o >/dev/null 2>&1
In file included from argument.cc:2:
./cdoDebugOutput.h:20:12: warning: expression result unused [-Wunused-value]
           expander{0,(void(p_message << std::forward<T>(args)),0)...};
           ^       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./cdoDebugOutput.h:86:17: note: in instantiation of function template specialization 'CdoLog::expand<char const (&)[37], const char *&>' requested here
        CdoLog::expand(message, args...);
                ^
argument.cc:17:5: note: in instantiation of function template specialization 'CdoDebug::Message_<char const (&)[37], const char *&>' requested here
    MESSAGE("Creating new file argument for file ", filename);
    ^
./cdoDebugOutput.h:149:40: note: expanded from macro 'MESSAGE'
#  define   MESSAGE(...)     CdoDebug::Message_(__func__,__VA_ARGS__)
                                       ^
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_getopt.cc -o libcdo_la-cdo_getopt.o >/dev/null 2>&1
./cdoDebugOutput.h:20:12: warning: expression result unused [-Wunused-value]
           expander{0,(void(p_message << std::forward<T>(args)),0)...};
           ^       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./cdoDebugOutput.h:86:17: note: in instantiation of function template specialization 'CdoLog::expand<char const (&)[41], char *&>' requested here
        CdoLog::expand(message, args...);
                ^
argument.cc:35:5: note: in instantiation of function template specialization 'CdoDebug::Message_<char const (&)[41], char *&>' requested here
    MESSAGE("Creating new pipe argument for pipename ", pipename );
    ^
./cdoDebugOutput.h:149:40: note: expanded from macro 'MESSAGE'
#  define   MESSAGE(...)     CdoDebug::Message_(__func__,__VA_ARGS__)
                                       ^
./cdoDebugOutput.h:20:12: warning: expression result unused [-Wunused-value]
           expander{0,(void(p_message << std::forward<T>(args)),0)...};
           ^       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./cdoDebugOutput.h:86:17: note: in instantiation of function template specialization 'CdoLog::expand<char const (&)[22]>' requested here
        CdoLog::expand(message, args...);
                ^
argument.cc:74:5: note: in instantiation of function template specialization 'CdoDebug::Message_<char const (&)[22]>' requested here
    MESSAGE("Creating new argument");
    ^
./cdoDebugOutput.h:149:40: note: expanded from macro 'MESSAGE'
#  define   MESSAGE(...)     CdoDebug::Message_(__func__,__VA_ARGS__)
                                       ^
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-cdo_task.lo `test -f 'cdo_task.cc' || echo './'`cdo_task.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_task.cc  -fno-common -DPIC -o .libs/libcdo_la-cdo_task.o
3 warnings generated.
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c argument.cc -o libcdo_la-argument.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_vlist.cc -o libcdo_la-cdo_vlist.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_task.cc -o libcdo_la-cdo_task.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-cdo_history.lo `test -f 'cdo_history.cc' || echo './'`cdo_history.cc
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libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_history.cc  -fno-common -DPIC -o .libs/libcdo_la-cdo_history.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_read.cc  -fno-common -DPIC -o .libs/libcdo_la-cdo_read.o
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-cmortable_parser.lo `test -f 'cmortable_parser.cc' || echo './'`cmortable_parser.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cmortable_parser.cc  -fno-common -DPIC -o .libs/libcdo_la-cmortable_parser.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_history.cc -o libcdo_la-cdo_history.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cdo_read.cc -o libcdo_la-cdo_read.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-after_sptrans.lo `test -f 'after_sptrans.cc' || echo './'`after_sptrans.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c after_sptrans.cc  -fno-common -DPIC -o .libs/libcdo_la-after_sptrans.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c after_sptrans.cc -o libcdo_la-after_sptrans.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-after_fctrans.lo `test -f 'after_fctrans.cc' || echo './'`after_fctrans.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c after_fctrans.cc  -fno-common -DPIC -o .libs/libcdo_la-after_fctrans.o
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libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c after_vertint.cc  -fno-common -DPIC -o .libs/libcdo_la-after_vertint.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c cmortable_parser.cc -o libcdo_la-cmortable_parser.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c after_dvtrans.cc -o libcdo_la-after_dvtrans.o >/dev/null 2>&1
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libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c after_vertint.cc -o libcdo_la-after_vertint.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c after_namelist.cc -o libcdo_la-after_namelist.o >/dev/null 2>&1
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libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c expr_yacc.cc  -fno-common -DPIC -o .libs/libcdo_la-expr_yacc.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c expr_lex.cc -o libcdo_la-expr_lex.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c expr_yacc.cc -o libcdo_la-expr_yacc.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c expr_fun.cc -o libcdo_la-expr_fun.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-features.lo `test -f 'features.cc' || echo './'`features.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c features.cc  -fno-common -DPIC -o .libs/libcdo_la-features.o
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-field.lo `test -f 'field.cc' || echo './'`field.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c field.cc  -fno-common -DPIC -o .libs/libcdo_la-field.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c expr.cc -o libcdo_la-expr.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-field2.lo `test -f 'field2.cc' || echo './'`field2.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c field2.cc  -fno-common -DPIC -o .libs/libcdo_la-field2.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c features.cc -o libcdo_la-features.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c field.cc -o libcdo_la-field.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-fieldc.lo `test -f 'fieldc.cc' || echo './'`fieldc.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c fieldc.cc  -fno-common -DPIC -o .libs/libcdo_la-fieldc.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c field2.cc -o libcdo_la-field2.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-fieldmem.lo `test -f 'fieldmem.cc' || echo './'`fieldmem.cc
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-fieldmer.lo `test -f 'fieldmer.cc' || echo './'`fieldmer.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c fieldmem.cc  -fno-common -DPIC -o .libs/libcdo_la-fieldmem.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c fieldmer.cc  -fno-common -DPIC -o .libs/libcdo_la-fieldmer.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c fieldc.cc -o libcdo_la-fieldc.o >/dev/null 2>&1
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c fieldmem.cc -o libcdo_la-fieldmem.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CXX   --mode=compile /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-fieldzon.lo `test -f 'fieldzon.cc' || echo './'`fieldzon.cc
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c fieldzon.cc  -fno-common -DPIC -o .libs/libcdo_la-fieldzon.o
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c fieldmer.cc -o libcdo_la-fieldmer.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-getMemorySize.lo `test -f 'getMemorySize.c' || echo './'`getMemorySize.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c getMemorySize.c  -fno-common -DPIC -o .libs/libcdo_la-getMemorySize.o
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c getMemorySize.c -o libcdo_la-getMemorySize.o >/dev/null 2>&1
/bin/sh ../libtool  --tag=CC   --mode=compile /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I.  -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2  -I/opt/local/include -I/opt/local/include/udunits2  -pipe -Os -arch x86_64  -D_THREAD_SAFE -pthread -c -o libcdo_la-getRSS.lo `test -f 'getRSS.c' || echo './'`getRSS.c
libtool: compile:  /opt/local/bin/clang-mp-5.0 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -c getRSS.c  -fno-common -DPIC -o .libs/libcdo_la-getRSS.o
getRSS.c:97:30: error: variable has incomplete type 'struct mach_task_basic_info'
        struct mach_task_basic_info info;
                                    ^
getRSS.c:97:9: note: forward declaration of 'struct mach_task_basic_info'
        struct mach_task_basic_info info;
               ^
getRSS.c:98:37: error: use of undeclared identifier 'MACH_TASK_BASIC_INFO_COUNT'
        mach_msg_type_number_t infoCount = MACH_TASK_BASIC_INFO_COUNT;
                                           ^
getRSS.c:99:37: error: use of undeclared identifier 'MACH_TASK_BASIC_INFO'
        if ( task_info( mach_task_self( ), MACH_TASK_BASIC_INFO,
                                           ^
3 errors generated.
make[2]: *** [libcdo_la-getRSS.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
libtool: compile:  /opt/local/bin/clang++-mp-5.0 -std=gnu++11 -DHAVE_CONFIG_H -I. -I../libcdi/src -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include/udunits2 -I/opt/local/include -I/opt/local/include/udunits2 -pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -stdlib=macports-libstdc++ -arch x86_64 -D_THREAD_SAFE -pthread -c fieldzon.cc -o libcdo_la-fieldzon.o >/dev/null 2>&1
make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2/src'
make: *** [all-recursive] Error 1
make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2'
Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/work/cdo-1.9.2" && /usr/bin/make -j4 -w all 
Exit code: 2
Error: Failed to build cdo: command execution failed
DEBUG: Error code: CHILDSTATUS 12344 2
DEBUG: Backtrace: command execution failed
    while executing
"system {*}$notty {*}$nice $fullcmdstring"
    invoked from within
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"$procedure $targetname"
Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_cdo/cdo/main.log for details.
Error: Follow https://guide.macports.org/#project.tickets to report a bug.
Error: Processing of port cdo failed
Sibylles-MacBook-Air:~ Sibylle$ 

[ryandesign (Ryan Carsten Schmidt)]

In the future, please attach the main.log file rather than pasting a huge amount of output, and if you do paste output, remember to format it correctly.

[tenomoto (Takeshi Enomoto)]

Sorry for slow response. You're using Lion! I'll see what I can do. cdo has been updated to 1.9.3. Does the problem persist with 1.9.3? Doesn't other version of clang work?