#56164 closed defect (wontfix)
qgis3 @3.0.1_2 crashes
Reported by: | dershow | Owned by: | Veence (Vincent) |
---|---|---|---|
Priority: | Normal | Milestone: | |
Component: | ports | Version: | |
Keywords: | Cc: | aaschwanden (Andy Aschwanden) | |
Port: | qgis3 |
Description (last modified by ryandesign (Ryan Carsten Schmidt))
I just upgraded qgis to 3.0.1_2. I followed the instructions here to get it to build properly. But, now if I try to open files it just crashes. More specifically: 1) If I open a project that works in qgis 3.0.0, it brings up a dialog that says: Handle Bad Layers and lists one of my layers (this dialog didn't occur in 3.0.0). If I click browse, to find the data for that layer, it crashes. 1a) If instead of clicking browse, I click OK, it brings up a dialog that says that there are still 1 unhandled layer(s) that will be lost if I close now. If I again click OK it skips that layer. For both of the above, the same project worked fine in 2.8 and in 3.0 and the files for the layer are present. 2) if I open a new project and then attempt to add a layer (vector or raster) it brings up the datasource dialog. If I then click on the three dots to select the file, it just crashes.
The crash does not bring up an dialog box, as typically happens when an application crashes on a Mac. I looked in my console app and in system.log I see this for each crash:
Mar 27 09:32:27 adershowitzMBP15 Qgis3[37266]: assertion failed: 17D102: libxpc.dylib + 72637 [F7E5F1BC-614B-39CB-B6CE-92A9C7B7EC0B]: 0x89
Some library issue?
Change History (28)
comment:1 Changed 7 years ago by dershow
comment:2 Changed 7 years ago by dershow
I realized that there are at least two different problems that might or might not be related. 1) When I try to open prior project, it seems to not find some layers that do exist, and worked fine in 3.0.0 2) If I try to open any file selection dialog box, it immediately crashes. I was able to get a crash log that could be helpful:
Process: Qgis3 [75415] Path: /Applications/MacPorts/Qgis3.app/Contents/MacOS/Qgis3 Identifier: Qgis3 Version: 3.0.1 (3.0.1 [exported]) Code Type: X86-64 (Native) Parent Process: Qgis3 [75395] Responsible: Qgis3 [75415] User ID: 1224806835 Date/Time: 2018-03-27 11:14:20.739 -0400 OS Version: Mac OS X 10.13.3 (17D102) Report Version: 12 Bridge OS Version: 3.0 (14Y661) Anonymous UUID: D681A62F-703F-FAE5-5704-F8E233A5815D Time Awake Since Boot: 2900 seconds System Integrity Protection: enabled Crashed Thread: 0 Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_PROTECTION_FAILURE at 0x00000001158e2f88 Exception Note: EXC_CORPSE_NOTIFY Termination Signal: Bus error: 10 Termination Reason: Namespace SIGNAL, Code 0xa Terminating Process: exc handler [0] VM Regions Near 0x1158e2f88: __LINKEDIT 00000001158cd000-00000001158e1000 [ 80K] r--/rwx SM=COW # [/opt/local/lib/libtcmalloc.4.dylib] --> __TEXT 00000001158e1000-0000000115991000 [ 704K] r-x/rwx SM=COW # [/opt/local/lib/libgeos-3.6.2.dylib] __DATA 0000000115991000-000000011599c000 [ 44K] rw-/rwx SM=COW # [/opt/local/lib/libgeos-3.6.2.dylib] Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libsystem_malloc.dylib 0x00007fff5b47c90e nano_force_unlock + 45 1 libsystem_malloc.dylib 0x00007fff5b47b664 _malloc_fork_child + 284 2 libSystem.B.dylib 0x00007fff590beafa libSystem_atfork_child + 24 3 libsystem_c.dylib 0x00007fff5b32183e fork + 47 4 _posixsubprocess.cpython-36m-darwin.so 0x0000000125ce1311 subprocess_fork_exec + 1030 5 org.python.python 0x00000001214fe2f1 _PyCFunction_FastCallDict + 166 6 org.python.python 0x000000012156206a call_function + 489 7 org.python.python 0x000000012155b693 _PyEval_EvalFrameDefault + 4407 8 org.python.python 0x00000001215627cc _PyEval_EvalCodeWithName + 1719 9 org.python.python 0x0000000121562ecf fast_function + 218 10 org.python.python 0x0000000121562041 call_function + 448 11 org.python.python 0x000000012155b693 _PyEval_EvalFrameDefault + 4407 12 org.python.python 0x00000001215627cc _PyEval_EvalCodeWithName + 1719 13 org.python.python 0x000000012156309f _PyFunction_FastCallDict + 449 14 org.python.python 0x00000001214c67b1 _PyObject_FastCallDict + 196 15 org.python.python 0x00000001214c68d4 _PyObject_Call_Prepend + 156 16 org.python.python 0x00000001214c6632 PyObject_Call + 101 17 org.python.python 0x00000001215114a2 slot_tp_init + 57 18 org.python.python 0x000000012150e430 type_call + 184 19 org.python.python 0x00000001214c677c _PyObject_FastCallDict + 143 20 org.python.python 0x00000001214c6b35 _PyObject_FastCallKeywords + 97 21 org.python.python 0x000000012156203a call_function + 441 22 org.python.python 0x000000012155b71d _PyEval_EvalFrameDefault + 4545 23 org.python.python 0x00000001215627cc _PyEval_EvalCodeWithName + 1719 24 org.python.python 0x0000000121562ecf fast_function + 218 25 org.python.python 0x0000000121562041 call_function + 448 26 org.python.python 0x000000012155b693 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230 org.python.python 0x0000000121562041 call_function + 448 231 org.python.python 0x000000012155b693 _PyEval_EvalFrameDefault + 4407 232 org.python.python 0x000000012156316f _PyFunction_FastCall + 121 233 org.python.python 0x0000000121562041 call_function + 448 234 org.python.python 0x000000012155b693 _PyEval_EvalFrameDefault + 4407 235 org.python.python 0x00000001215627cc _PyEval_EvalCodeWithName + 1719 236 org.python.python 0x000000012155a4e2 PyEval_EvalCode + 42 237 org.python.python 0x000000012158252a run_mod + 54 238 org.python.python 0x000000012158167e PyRun_StringFlags + 120 239 libqgispython.3.0.1.dylib 0x00000001214b44f9 QgsPythonUtilsImpl::evalString(QString const&, QString&) + 113 240 libqgispython.3.0.1.dylib 0x00000001214b4c70 QgsPythonUtilsImpl::startPlugin(QString const&) + 104 241 libqgis_app.3.0.1.dylib 0x000000010bcc7b57 QgsPluginRegistry::loadPythonPlugin(QString const&) + 135 242 libqgis_app.3.0.1.dylib 0x000000010bcca6e6 QgsPluginRegistry::restoreSessionPlugins(QString const&) + 3476 243 libqgis_app.3.0.1.dylib 0x000000010ba9fb3e QgisApp::QgisApp(QSplashScreen*, bool, bool, QString const&, QString const&, QWidget*, QFlags<Qt::WindowType>) + 17238 244 org.qgis.qgis3 0x000000010b521be8 main + 18460 245 libdyld.dylib 0x00007fff5b2c2115 start + 1 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000203 rbx: 0x00000001158e2f88 rcx: 0x0000000000000000 rdx: 0xffffffffffffffff rdi: 0x00000001158c1f88 rsi: 0x0000000000000088 rbp: 0x00007ffee46e7c30 rsp: 0x00007ffee46e7c10 r8: 0x0000000000000024 r9: 0x00000000000000a0 r10: 0x00007fff5b4119ba r11: 0x0000000000000207 r12: 0x0000000000000000 r13: 0x00000001283704d0 r14: 0x00000001158c1f88 r15: 0x0000000000000000 rip: 0x00007fff5b47c90e rfl: 0x0000000000010246 cr2: 0x00000001158e2f88 Logical CPU: 4 Error Code: 0x00000006 Trap Number: 14 Binary Images: 0x10b50e000 - 0x10ba7cff7 +org.qgis.qgis3 (3.0.1 - 3.0.1 [exported]) 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comment:3 Changed 7 years ago by ryandesign (Ryan Carsten Schmidt)
Cc: | vince@… removed |
---|---|
Description: | modified (diff) |
Owner: | set to Veence |
Status: | new → assigned |
Summary: | qgis3 crashes → qgis3 @3.0.1_2 crashes |
comment:4 Changed 7 years ago by Veence (Vincent)
I agree, I have the same problem too. It seems that version of QGIS introduces yet more bugs than it tries to solve. Did you try a brief look on Internet? I am fairly snowed under this week and I fear I will only have the time for a cursory look :(
comment:5 Changed 7 years ago by dershow
I had not really looked. But, I'm on the qgis mailing list and hadn't seem any talk about this issue. And, since this make qgis3 completely non-usable, I figured that it was probably a build/link type issue that related to the Macports build. But, I'm not sure.
comment:6 Changed 7 years ago by Veence (Vincent)
TBH, I just had a look into the QGis bug tracker, it’s overloaded with various crash reports. It seems this version is really unstable.
comment:7 Changed 7 years ago by aaschwanden (Andy Aschwanden)
Cc: | aaschwanden added |
---|
comment:8 Changed 7 years ago by dershow
I upgraded to 3.0.2 and I still see the identical problem. If I try to use any file open dialog, qgis3 just crashes. It only works to open a recent project. And that seems to always show the dialog for some bad layers. I did see this ticket https://trac.macports.org/ticket/56169 that suggests that someone can get it to run, and that the kyngchaos binary does work. So, the problem likely relates to some library issue.
comment:9 Changed 7 years ago by aaschwanden (Andy Aschwanden)
I second that QGIS 3.02 on macports is not usable and always crashes for me (on two different systems) yet kyngchaos work (but is not linked to my other favorite libs.
comment:10 Changed 7 years ago by pmetzger (Perry E. Metzger)
Veence: As the port maintainer, how would you like to fix this problem? Perhaps we should backtrack to a stable version?
comment:11 Changed 7 years ago by Veence (Vincent)
Sorry I was pretty busy lately. I should work on a qt59 version, since it seems 5.10 is responsible for all this mess.
comment:12 Changed 7 years ago by Veence (Vincent)
Ok, I’ve tried this. It fails the same way. I’m going to investigate further into it
comment:13 Changed 7 years ago by Veence (Vincent)
Also, I should be able at least to figure out what’s the problem since it seems to be faulty memory allocations. Buuuuut Valgrind doesn’t work on High Sierra, and I don’t think I have access to a 10.12 box. Could someone help me with this?
comment:14 Changed 6 years ago by aaschwanden (Andy Aschwanden)
Not sure if this helps, but the valdgrind-devel port compiles for me under High Sierra, though I don't know if it works since I don't really know valgrind.
comment:15 Changed 6 years ago by Veence (Vincent)
I agree the valgrind-devel compiles and seems to run. But try
valgrind /Applications/MacPorts/QGis3/Contents/MacOS/Qgis3
(actually your path may vary) and see what happens. Most likely it will stop at an unknown Mach call. I tried to update the port to the latest GitHub revision, and it crashes at an assertion point.
I think the only viable alternative is using one of Xcode’s Instruments, but I’ll have to figure out which one.
comment:16 Changed 6 years ago by Veence (Vincent)
Ok, I think I’ve got it. The multiple crashes are called by the use of libtcmalloc, which is part of gperftools. gperftools is required by leveldb, a key/value database (both products are Google's). For some unknown reason qtXX-qtwebkit depends on leveldb, and thus pulls both packages in.
But it seems one of those two is buggy.
Remove the qtwebkit’s dependency on leveldb and… not only qtwebkit builds fine, but the crashes are gone.
I’m going to open a ticket about this.
comment:17 Changed 6 years ago by Veence (Vincent)
Resolution: | → wontfix |
---|---|
Status: | assigned → closed |
Okay. I’ve been using QGis 3 extensively yesterday night and didn’t experience a single crash. This is definitely not QGis related, so I’m closing it with a won’t fix. At that point, we’re looking into the bug in qt5-qtwebkit, so there’s no fix yet, just a workaround:
- Uninstall qt5-qtwebkit (or w/e version you’ve installed), ignoring the warning message on broken dependencies;
- Open the qt5 Portfile (in the aqua group), locate the qtwebkit subpart, and remove the leveldb dependency (i.e. “port:leveldb” token);
- Uninstall leveldb and gperftools;
- Recompile qtwebkit FROM SOURCE (using the -s switch such as in port -sv install qt5-qtwebkit)
It should work fine. Please report.
comment:18 Changed 6 years ago by Veence (Vincent)
Okay, I’ve pulled in the necessary changes in the main tree. The above process is no more required. Just update, and pay attention that leveldb is part of the upgrade. If you have version 1.20_1 installed, you should be good to go.
comment:19 Changed 6 years ago by aaschwanden (Andy Aschwanden)
Tested on one of my machine and it works. Will try my other system on Monday.
Thanks for your efforts!
comment:20 Changed 6 years ago by Veence (Vincent)
Excellent news and you’re welcome. Sorry it took so long — it was a bit knotty to unravel!
comment:21 Changed 6 years ago by Veence (Vincent)
Did you have time to check and confirm it works now? Also upgrade to 3.0.3, please.
comment:22 Changed 6 years ago by dershow
I just got 3.0.3 port installed. I just tried to open a project that opens fine using the 3.0 binary (from Kyngchaos). After I select the project the first thing that I see is a dialog box "Handle bad layers" Each layer had a path that was local "./layer.jp2" But, now I can browse to each one and correct it (that used to crash before the fix). but now, after correcting each one I can click OK, but it brings up a dialog box saying "there are still 6 unhandled layers that will be lost if you closed now". I hit OK. It then opened the normal qgis layout, but then crashed soon after, but I can't now reproduce the crash. I also just figured out that the layers that are now refusing to load are all jp2 images. I also can't add those layers in manually. So, it seems that the layers problem might just be that the jpeg2000 library is not being linked? Perhaps there is just a different flag that can be added? Otherwise, it does seem to be working.
comment:23 Changed 6 years ago by Veence (Vincent)
Please check that your installed gdal has been compiled with either the +openjpeg or +jasper library. If not, then try reinstalling gdal with +openjpeg (which is more performant than Jasper).
comment:24 Changed 6 years ago by dershow
That did it! Thanks. I have just used it a bit, and so far it is working fine.
comment:25 Changed 6 years ago by Veence (Vincent)
Ok, great it works for you. It seems we’re definitely out from under. Enjoy!
comment:26 Changed 6 years ago by aaschwanden (Andy Aschwanden)
I've been trying to update to 3.0.3 but at the same time, macports tries to pull in a new goal version, 2.3.0.20180522_0 , which fails to compile.
I'll file a ticket with gdal.
comment:28 Changed 6 years ago by aaschwanden (Andy Aschwanden)
OK, QGIS 3.0.3 now compiles and runs on both of my systems.
I tried deactivating @3.0.1_2 and instead activating my old @3.0.0_1 and now Qgis won't open at all. I get an error when I try to open it, "Qgis3 cannot be opened because of a problem. Check with the developers to make sure that Qgis3 works with this version of macOS". I assume that there is some library issue with the upgraded version and proj4 versus proj and gdal etc.