Opened 7 years ago
Closed 7 years ago
#56445 closed defect (duplicate)
hdf5 - Headers are 1.10.1, library is 1.10.2
| Reported by: | smalleyr | Owned by: | tenomoto (Takeshi Enomoto) |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.4.4 |
| Keywords: | Cc: | ||
| Port: | gmt4 gmt5 |
Description (last modified by mf2k (Frank Schima))
Warning! ***HDF5 library version mismatched error*** The HDF5 header files used to compile this application do not match the version used by the HDF5 library to which this application is linked.
Attachments (1)
Change History (9)
comment:1 follow-up: 5 Changed 7 years ago by smalleyr
comment:2 Changed 7 years ago by mf2k (Frank Schima)
| Cc: | takeshi@… removed |
|---|---|
| Description: | modified (diff) |
| Owner: | set to tenomoto |
| Status: | new → assigned |
comment:3 Changed 7 years ago by mf2k (Frank Schima)
| Description: | modified (diff) |
|---|
comment:4 Changed 7 years ago by ryandesign (Ryan Carsten Schmidt)
If you're encountering a build failure, please attach the main.log so we can see what happened.
comment:5 Changed 7 years ago by ryandesign (Ryan Carsten Schmidt)
Replying to smalleyr:
There is a short, ~6 item long, GMT Forum discussion on the same problem with GMT5, that the submitter was able to fix, but it did not work for me.
Could you give us a link to that thread?
comment:6 Changed 7 years ago by jmroot (Joshua Root)
| Component: | base → ports |
|---|
comment:7 Changed 7 years ago by smalleyr
http://gmt.soest.hawaii.edu/boards/1/topics/6903
The problem started a few weeks ago. There is another ticket - referred to in the thread - about the hdf5 problem. There are thousands of hits looking for "Warning! *HDF5 library version mismatched error*" on the web.
Both gmt4 and gmt5 suffer from this problem, although gmt4 seems to install. gmt4 runs are unstable (I have one program that runs every other call).
Changed 7 years ago by smalleyr
log file for gmt5 - which is failing install - showing Warning! *HDF5 library version mismatched error*
comment:8 Changed 7 years ago by tenomoto (Takeshi Enomoto)
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
Duplicate of #56312.
The problem started with a routine ports upgrade about a week ago.
I deleted all macports, home-brew, and conda installs, then upgraded from El Capitan to Sierra before using macports to attempt to reinstall GMT4 and GMT5 (actually the gmt5 install fails and I'll be submitting another ticket for this, but both gmt4 and gmt5 depend on the same hdf5 install).
There is a short, ~6 item long, GMT Forum discussion on the same problem with GMT5, that the submitter was able to fix, but it did not work for me.