Opened 6 years ago
Last modified 4 years ago
#57702 assigned defect
py27-h5py 2.8.0_2 fails to build
Reported by: | dstrubbe (David Strubbe) | Owned by: | eborisch (Eric A. Borisch) |
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Priority: | Normal | Milestone: | |
Component: | ports | Version: | |
Keywords: | Cc: | ||
Port: | py-h5py |
Description (last modified by dstrubbe (David Strubbe))
I am trying to upgrade from py27-h5py @2.8.0_1, without any variants in new or old, and get this error in building:
In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-h5py/py27-h5py/work/h5py-2.8.0/h5py/defs.c:660: In file included from ./h5py/api_compat.h:27: In file included from /opt/local/include/hdf5.h:22: /opt/local/include/H5public.h:60:13: fatal error: 'mpi.h' file not found # include <mpi.h> ^~~~~~~ 1 warning and 1 error generated.
This block occurred earlier:
******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.4' MPI Enabled: False Rebuild Required: True ********************************************************************************
I have various MPI ports installed, although this block suggests it is not finding them in configure. I have hdf5 @1.10.4_0+cxx+fortran+gfortran+hl+mpich installed.
Attachments (1)
Change History (7)
Changed 6 years ago by dstrubbe (David Strubbe)
comment:1 Changed 6 years ago by dstrubbe (David Strubbe)
Description: | modified (diff) |
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comment:2 Changed 6 years ago by mf2k (Frank Schima)
Port: | py27-h5py removed |
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comment:3 Changed 6 years ago by eborisch (Eric A. Borisch)
comment:4 Changed 6 years ago by dstrubbe (David Strubbe)
hdf5 @1.10.4_0+cxx+fortran+gfortran+hl+mpich; py27-mpi4py is not installed; py27-h5py no variants.
openmpi-default @3.0.0_0+gcc7 openmpi-gcc6 @3.0.0_0+fortran openmpi-gcc7 @3.0.0_0+fortran mpich-default @3.2.1_5+gcc8 mpich-gcc6 @3.2.1_6+fortran mpich-gcc7 @3.2.1_6+fortran mpich-gcc8 @3.2.1_6+fortran
comment:6 Changed 4 years ago by dstrubbe (David Strubbe)
py27-h5py no longer exists, but I tried "sudo port install py38-h5py" and that worked fine. Then I tried "sudo port install py38-h5py +mpich" and got:
---> Fetching archive for py38-h5py Error: Internal error: 'hdf5 py38-mpi4py' does not refer to an installed port. ---> Attempting to fetch py38-h5py-3.1.0_1+mpich.darwin_16.x86_64.tbz2 from https://ywg.ca.packages.macports.org/mirror/macports/packages/py38-h5py ---> Attempting to fetch py38-h5py-3.1.0_1+mpich.darwin_16.x86_64.tbz2 from https://kmq.jp.packages.macports.org/py38-h5py ---> Attempting to fetch py38-h5py-3.1.0_1+mpich.darwin_16.x86_64.tbz2 from https://mse.uk.packages.macports.org/py38-h5py ---> Fetching distfiles for py38-h5py Error: Internal error: 'hdf5 py38-mpi4py' does not refer to an installed port. ---> Attempting to fetch h5py-3.1.0.tar.gz from https://github.com/h5py/h5py/tarball/3.1.0 ---> Verifying checksums for py38-h5py
It succeeded but clearly there is a check or dependency that isn't being handled correctly.
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I'm not able to reproduce. What MPI flavors do you have installed and what variants do you have selected on hdf5, py27-mpi4py, and py27-h5py.