Opened 6 years ago
Closed 12 months ago
#58332 closed defect (wontfix)
py27-astropy segfaults at 14% in tests
| Reported by: | Russell-Jones-OxPhys (Russell Jones) | Owned by: | Schamschula (Marius Schamschula) |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.5.4 |
| Keywords: | Cc: | ||
| Port: | py-astropy |
Description
This is from a semi-clean install (/opt/local/ removed) I can repeat with a full clean if that'd make a difference.
sudo port install -f py27-astropy sudo port install py27-pytest # installs 4.4.0, <3.7 required sudo port uninstall py27-pytest sudo port install py27-pip python2.7 -m pip install --user pip setuptools wheel python2.7 -m pip install --user 'pytest<3.7' # installs 3.6.4 python2.7 -c 'import astropy;astropy.test()' platform darwin -- Python 2.7.16, pytest-3.6.4, py-1.8.0, pluggy-0.7.1 Running tests with Astropy version 2.0.10. Running tests in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/astropy. Date: 2019-04-08T13:56:52 Platform: Darwin-18.5.0-x86_64-i386-64bit Executable: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python Full Python Version: 2.7.16 (default, Apr 1 2019, 14:50:41) [GCC 4.2.1 Compatible Apple LLVM 10.0.1 (clang-1001.0.46.3)] encodings: sys: ascii, locale: UTF-8, filesystem: utf-8, unicode bits: 15 byteorder: little float info: dig: 15, mant_dig: 15 Numpy: 1.16.2 Scipy: not available Matplotlib: not available h5py: not available Pandas: not available Cython: 0.29.6 astropy_helpers: 2.0.8 Using Astropy options: remote_data: none. rootdir: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/astropy, inifile: collected 12695 items / 9 skipped [Lots of dots, filenames, etc removed] ../../opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/astropy/coordinates/tests/test_sky_coord.py . [ 11%] ................................................................................................ [ 12%] ................................................................................................ [ 13%] ................................................................................................ [ 14%] .........................................................................................x.Segmentation fault: 11
$ port installed The following ports are currently installed: bzip2 @1.0.6_0 (active) cctools @921_1+llvm70 (active) cfitsio @3.450_0 (active) cython_select @0.1_1 (active) db48 @4.8.30_4 (active) erfa @1.4.0_0 (active) expat @2.2.6_1 (active) fftw-3 @3.3.8_0 (active) gcc8 @8.3.0_0 (active) gcc_select @0.1_8 (active) gettext @0.19.8.1_0 (active) gmp @6.1.2_1 (active) icu @58.2_2 (active) isl @0.20_0 (active) ld64 @3_1+ld64_xcode (active) ld64-xcode @2_1 (active) libcxx @5.0.1_4 (active) libedit @20181209-3.1_0 (active) libffi @3.2.1_0 (active) libgcc @1.0_0 (active) libgcc8 @8.3.0_0 (active) libiconv @1.15_0 (active) libmpc @1.1.0_1 (active) libxml2 @2.9.9_1 (active) llvm-7.0 @7.0.1_1 (active) llvm_select @2_0 (active) mpfr @4.0.2_0 (active) ncurses @6.1_0 (active) nosetests_select @0.1_0 (active) OpenBLAS @0.3.5_1+gcc8+lapack (active) openssl @1.0.2r_0 (active) py27-astropy @2.0.10_0 (active) py27-cython @0.29.6_0 (active) py27-nose @1.3.7_1 (active) py27-numpy @1.16.2_1+gfortran+openblas (active) py27-setuptools @41.0.0_0 (active) python2_select @0.0_3 (active) python27 @2.7.16_1 (active) python_select @0.3_8 (active) sqlite3 @3.27.2_0 (active) wcslib @6.2_0 (active) xar @1.6.1_0 (active) xz @5.2.4_0 (active) zlib @1.2.11_0 (active)
Attachments (3)
Change History (23)
comment:1 Changed 6 years ago by Russell-Jones-OxPhys (Russell Jones)
comment:2 Changed 6 years ago by mf2k (Frank Schima)
| Cc: | duncanmmacleod added; duncan.macleod@… robitaille@… removed |
|---|---|
| Owner: | set to astrofrog |
| Port: | py-astropy added; py27-astropy removed |
| Status: | new → assigned |
comment:3 Changed 6 years ago by Russell-Jones-OxPhys (Russell Jones)
| Port: | py27-astropy added; py-astropy removed |
|---|
I've run
sudo port uninstall py27-astropy python2.7 -m pip install --user --upgrade astropy==2.0.10 python2.7 -c 'import astropy;astropy.test()'
It got to 76% then failed at
Library/Python/2.7/lib/python/site-packages/astropy/wcs/tests/extension/test_extension.py .
=============================================== FAILURES ===============================================
___________________________________ TestUfuncCoverage.test_coverage ____________________________________
self = <astropy.units.tests.test_quantity_ufuncs.TestUfuncCoverage object at 0x11958a7d0>
@pytest.mark.skipif(HAS_SCIPY,
reason='scipy.special coverage is incomplete')
def test_coverage(self):
all_np_ufuncs = set([ufunc for ufunc in np.core.umath.__dict__.values()
if type(ufunc) == np.ufunc])
from .. import quantity_helper as qh
all_q_ufuncs = (qh.UNSUPPORTED_UFUNCS |
set(qh.UFUNC_HELPERS.keys()))
> assert all_np_ufuncs - all_q_ufuncs == set([])
E AssertionError: assert set([<ufunc 'matmul'>]) == set([])
E Extra items in the left set:
E <ufunc 'matmul'>
E Use -v to get the full diff
Library/Python/2.7/lib/python/site-packages/astropy/units/tests/test_quantity_ufuncs.py:41: AssertionError
=========================================== warnings summary ===========================================
Library/Python/2.7/lib/python/site-packages/astropy/convolution/tests/test_convolve_fft.py::TestConvolve1D::()::test_unity_1_none[None-interpolate-True]
comment:4 Changed 6 years ago by Russell-Jones-OxPhys (Russell Jones)
Though the tests do not complete,
from astropy.io import fits
from astropy.wcs import WCS
ff='FIRST_1563.fits'
f_fits = fits.open(ff)
print('ok')
w_f = WCS(f_fits[0].header, naxis=2)
print('not ok')
completes normally.
comment:5 follow-up: 6 Changed 6 years ago by mf2k (Frank Schima)
| Port: | py-astropy added; py27-astropy removed |
|---|
Please do not change the port field. The description covers the specifics of your report.
comment:6 Changed 6 years ago by Russell-Jones-OxPhys (Russell Jones)
Replying to mf2k:
Please do not change the port field. The description covers the specifics of your report.
Sure, sorry about that. I was midway through editing a comment when I was notified you'd replied and didn't consider the effect submitting the comment would have on the fields you changed.
comment:7 Changed 5 years ago by jmroot (Joshua Root)
If someone could attach a crash log, that might be helpful in tracking this down.
comment:8 Changed 5 years ago by kencu (Ken)
here is what I got on my day-to-day 10.6.8 machine, that also crashed during the py27-astropy test run:
Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000 Crashed Thread: 0 Dispatch queue: com.apple.main-thread Thread 0 Crashed: Dispatch queue: com.apple.main-thread 0 libSystem.B.dylib 0x00007fff80c6fc00 strlen + 16 1 org.python.python 0x000000011aba2ad7 PyString_FromString + 23 2 org.python.python 0x000000011ab95159 PyDict_SetItemString + 25 3 _wcs.so 0x000000010cd5e6d2 PyWcsprm_fix + 1282 4 org.python.python 0x000000011abff07b PyEval_EvalFrameEx + 10171 5 org.python.python 0x000000011abfc664 PyEval_EvalCodeEx + 2212 6 org.python.python 0x000000011ac071cd fast_function + 109 7 org.python.python 0x000000011abfeacc PyEval_EvalFrameEx + 8716 8 org.python.python 0x000000011abfc664 PyEval_EvalCodeEx + 2212 9 org.python.python 0x000000011ab7c6a4 function_call + 340 10 org.python.python 0x000000011ab53051 PyObject_Call + 97
I then tried the small example above:
from astropy.io import fits from astropy.wcs import WCS ff='HorseHead.fits' f_fits = fits.open(ff) w_f = WCS(f_fits[0].header, naxis=2)
using <https://astropy.stsci.edu/data/tutorials/FITS-images/HorseHead.fits>
and I got a similar crash in the WCS(f_fits..) function call
I'll upload both these crashlogs.
FWIW, I added the test suite to the wcslib Portfile:
test.run yes test.target check
and all the tests in wcslib pass.
Changed 5 years ago by kencu (Ken)
| Attachment: | py27-pyastropytest.crash added |
|---|
Changed 5 years ago by kencu (Ken)
| Attachment: | py27-pyastropy_test_program.crash added |
|---|
the small test program crash
comment:9 Changed 5 years ago by kencu (Ken)
There are dozens of uses of strlen in py-astropy.
However, editing the py-astropy script to use the bundled wcslib and cfitsio (I changed both), the small test program no longer crashes.
The full test suite then runs to 77% but errors out with this:
retval = _minpack._lmdif(func, x0, args, full_output, ftol, xtol,
> gtol, maxfev, epsfcn, factor, diag)
E TypeError: Cannot cast array data from dtype('O') to dtype('float64') according to the rule 'safe'
comment:10 Changed 5 years ago by kencu (Ken)
I wonder if there is there much point working on this issue any longer?
The py27-astropy looks to be a held-back version for older pythons. If you use python 3.5 or newer you get the current version.
I would run the test suite on that, but it requires pytest-astropy which we don't have in MacPorts as yet.
comment:11 Changed 5 years ago by Russell-Jones-OxPhys (Russell Jones)
@kenku it took a while to see your replies, as our mail filter decided they were spam :/
We do have users who are stuck with 2.7 for a time here (due to time constraints), but I could quite understand if you don't want to work on fixing legacy bugs.
Which file in Library/Python/2.7/lib/python/site-packages/astropy/ do you see the test error in?
Could you attach your Portfile with vendorized libs, please?
comment:12 Changed 5 years ago by kencu (Ken)
In the py27-astropy Portfile, there is this bit:
build.args-append --use-system-cfitsio \
--use-system-expat \
--use-system-wcslib \
--use-system-erfa
For temporary testing, I just changed it to
build.args-append --use-system-expat \
--use-system-erfa
If you needed to permanently change the build.args for the py27 subport, you'd build.args-delete the ones you don't want in the appropriate section of the Portfile.
comment:13 Changed 5 years ago by kencu (Ken)
looks like the first error in the py27-atropy test suite (on this system) using the vendorized cfitsio and wcslib is :
============================================== ERRORS =============================================== ______________________ ERROR at setup of TestJointFitter.test_joint_parameter _______________________ self = <class 'astropy.modeling.tests.test_fitters.TestJointFitter'>
I'll attach the full error log in case that is of any use to you.
Changed 5 years ago by kencu (Ken)
| Attachment: | py27-astropy-testrun-with-vendorized-cfitsio-and-wcslib.txt.zip added |
|---|
comment:14 Changed 5 years ago by mf2k (Frank Schima)
| Cc: | duncanmmacleod removed |
|---|---|
| Owner: | changed from astrofrog to duncanmmacleod |
comment:15 Changed 5 years ago by Schamschula (Marius Schamschula)
| Cc: | Schamschula added |
|---|
comment:16 Changed 5 years ago by Schamschula (Marius Schamschula)
I've update py-astropy to 3.2.3. I ran the tests (using python 3.7) and got a bit farther:
In [3]: import astropy;astropy.test()
/opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/conftest.py:38: MatplotlibDeprecationWarning:
The examples.directory rcparam was deprecated in Matplotlib 3.0 and will be removed in 3.2. In the future, examples will be found relative to the 'datapath' directory.
matplotlibrc_cache.update(matplotlib.rcParams)
==================================================================================================================================================== test session starts =====================================================================================================================================================
platform darwin -- Python 3.7.5, pytest-5.2.1, py-1.8.0, pluggy-0.13.0
Running tests with Astropy version 3.2.3.
Running tests in /opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy.
Date: 2019-11-03T10:55:28
Platform: Darwin-18.7.0-x86_64-i386-64bit
Executable: /opt/local/Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7
Full Python Version:
3.7.5 (default, Oct 19 2019, 01:20:12)
[Clang 10.0.1 (clang-1001.0.46.4)]
encodings: sys: utf-8, locale: UTF-8, filesystem: utf-8
byteorder: little
float info: dig: 15, mant_dig: 15
Numpy: 1.17.3
Scipy: 1.3.1
Matplotlib: 3.1.1
h5py: not available
Pandas: 0.25.2
Cython: 0.29.14
Scikit-image: not available
asdf: not available
astropy_helpers: 3.2.2
Using Astropy options: remote_data: none.
rootdir: /opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy
plugins: openfiles-0.4.0, remotedata-0.3.2, arraydiff-0.3, astropy-header-0.1, doctestplus-0.4.0
collected 12757 items / 14 skipped / 12743 selected
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/_erfa/tests/test_erfa.py ........ [ 0%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/config/tests/test_configs.py ............... [ 0%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/constants/tests/test_constant.py ........ [ 0%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/constants/tests/test_pickle.py xxxxxxxxx [ 0%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/constants/tests/test_prior_version.py ......... [ 0%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/convolution/tests/test_convolve.py .............................................................................................................................................................................. [ 1%]
..................................................................................................................................................................................x.x.x.x.x.x.x.x..................................................................................................................... [ 4%]
[ 4%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/convolution/tests/test_convolve_fft.py .......................................................................................................................................................................... [ 5%]
...................................................................................................................................................................................................................................................................................................................... [ 7%]
.......... [ 8%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/convolution/tests/test_convolve_kernels.py .............................................................................................................. [ 8%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/convolution/tests/test_convolve_models.py ............ [ 8%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/convolution/tests/test_convolve_nddata.py ... [ 8%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/convolution/tests/test_discretize.py ...s...........s................... [ 9%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/convolution/tests/test_kernel_class.py .......................................................................................................................................................................... [ 10%]
........... [ 10%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/convolution/tests/test_pickle.py .xx.xx.xx [ 10%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_angles.py .......................................... [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_angular_separation.py .... [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_api_ape5.py ....s [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_arrays.py ............. [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_atc_replacements.py .... [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_celestial_transformations.py ............ss.. [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_distance.py .......... [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_earth.py ..............s.. [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_finite_difference_velocities.py ......s..xx [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_formatting.py .......... [ 11%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_frames.py ..........................s............. [ 12%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_frames_with_velocity.py ................................................ [ 12%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_funcs.py ..... [ 12%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_iau_fullstack.py sssssssssssssssssssssssssssssssssssssssssssssssssss. [ 12%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_intermediate_transformations.py .....sssssssssssssssssssssssssssssss..........ssssssssss.s [ 13%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_matching.py ............. [ 13%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_matrix_utilities.py .. [ 13%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_name_resolve.py s.ss [ 13%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_pickle.py ....xx.x...xx.x...xx.x. [ 13%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_regression.py .ss.s.....s.sss.s....s....s.... [ 13%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_representation.py ................................................................................s................. [ 14%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_representation_arithmetic.py ......................................................................................... [ 15%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_representation_methods.py ............ [ 15%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_shape_manipulation.py sssssssss [ 15%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_sites.py .ss.s... [ 15%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_sky_coord.py ............................................................................................................................................................................. [ 17%]
................................................................................................s.............................................................................................................x...............s........... [ 18%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_sky_coord_velocities.py .........x...........x.x........... [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_skyoffset_transformations.py ...........s................. [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_solar_system.py s....ssssssssssssss....sss [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_transformations.py ..........................s... [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_unit_representation.py s [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/test_velocity_corrs.py ssssss [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/accuracy/test_altaz_icrs.py ssss [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/accuracy/test_ecliptic.py ......... [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/accuracy/test_fk4_no_e_fk4.py . [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/accuracy/test_fk4_no_e_fk5.py . [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/accuracy/test_galactic_fk4.py . [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/coordinates/tests/accuracy/test_icrs_fk5.py . [ 19%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/cosmology/tests/test_cosmology.py .......................................... [ 20%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/cosmology/tests/test_pickle.py ... [ 20%]
../../opt/local/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/astropy/io/ascii/tests/test_c_reader.py .....
^C
There it hung for over an hour, so I stopped it using the keyboard. I suspect there are issues with the pytest packages.
Note: I made local Portfiles for the missing py-pytest-* packages. See: https://github.com/Schamschula/macports/tree/master/python
comment:17 Changed 4 years ago by mf2k (Frank Schima)
| Owner: | duncanmmacleod deleted |
|---|
comment:18 Changed 4 years ago by Schamschula (Marius Schamschula)
Opened issue upstream: https://github.com/astropy/pytest-astropy/issues/37
comment:19 Changed 4 years ago by Schamschula (Marius Schamschula)
| Cc: | Schamschula removed |
|---|---|
| Owner: | set to Schamschula |
comment:20 Changed 12 months ago by Schamschula (Marius Schamschula)
| Resolution: | → wontfix |
|---|---|
| Status: | assigned → closed |
Support for py27-astropy was dropped by https://github.com/macports/macports-ports/commit/c0a0799dde208526ad9a5556a6137c6a5c397df1
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Oh, and
though it happens on 10.13.6 as well, at least with a larger set of ports installed.
A crash (segfault/signal 11) can be triggered with
from astropy.io import fits from astropy.wcs import WCS ff='FIRST_1563.fits' f_fits = fits.open(ff) print('ok') w_f = WCS(f_fits[0].header, naxis=2) print('not ok')It happens before the "print('not ok')" I'm just finding out if providing the FITS file here is OK.