Opened 5 years ago
Last modified 3 years ago
#59480 assigned defect
R @3.5.1_3 +builtin_lapack+cairo+gcc8+recommended+x11: Building issue: Symbol not found: _timespec_get expected in: /usr/lib/libSystem.B.dylib
Reported by: | ceandrade (Carlos Eduardo de Andrade) | Owned by: | kjellpk (Kjell Konis) |
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Priority: | Normal | Milestone: | |
Component: | ports | Version: | 2.6.2 |
Keywords: | Cc: | cooljeanius (Eric Gallager) | |
Port: | R |
Description
R 3.5.1 is not building properly on MacPorts 2.6.2:
$ sudo port selfupdate ---> Updating MacPorts base sources using rsync MacPorts base version 2.6.2 installed, MacPorts base version 2.6.2 downloaded. ---> Updating the ports tree ---> MacPorts base is already the latest version $ sudo port clean R ---> Cleaning R $ sudo port install R ---> Computing dependencies for R ---> Fetching archive for R ---> Attempting to fetch R-3.5.1_3+builtin_lapack+cairo+gcc9+recommended+x11.darwin_18.x86_64.tbz2 from https://packages.macports.org/R ---> Attempting to fetch R-3.5.1_3+builtin_lapack+cairo+gcc9+recommended+x11.darwin_18.x86_64.tbz2 from http://aus.us.packages.macports.org/macports/packages/R ---> Attempting to fetch R-3.5.1_3+builtin_lapack+cairo+gcc9+recommended+x11.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/R ---> Fetching distfiles for R ---> Verifying checksums for R ---> Extracting R ---> Configuring R ---> Building R Error: Failed to build R: command execution failed Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/main.log for details. Error: Follow https://guide.macports.org/#project.tickets to report a bug. Error: Processing of port R failed
Xcode: Version 11.0 (11A420a)
It looks like is an issue during linkage:
:info:build installing 'sysdata.rda' :info:build dyld: lazy symbol binding failed: Symbol not found: _timespec_get :info:build Referenced from: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-3.5.1/lib/libR.dylib :info:build Expected in: /usr/lib/libSystem.B.dylib :info:build dyld: Symbol not found: _timespec_get :info:build Referenced from: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-3.5.1/lib/libR.dylib :info:build Expected in: /usr/lib/libSystem.B.dylib
Attachments (1)
Change History (5)
Changed 5 years ago by ceandrade (Carlos Eduardo de Andrade)
comment:1 Changed 5 years ago by jmroot (Joshua Root)
Milestone: | MacPorts 2.7.0 |
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comment:2 Changed 5 years ago by mf2k (Frank Schima)
Keywords: | R build linkage error _timespec_get libSystem.B.dylib removed |
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comment:4 Changed 3 years ago by cooljeanius (Eric Gallager)
Cc: | cooljeanius added |
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