Opened 4 years ago
Closed 2 years ago
#62507 closed defect (fixed)
Error: Can't install sundials because conflicting ports are active: sundials2
Reported by: | dbl001 (dbl) | Owned by: | |
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Priority: | Normal | Milestone: | |
Component: | ports | Version: | 2.6.4 |
Keywords: | Cc: | MarcusCalhoun-Lopez (Marcus Calhoun-Lopez), robwgla, Schamschula (Marius Schamschula), cooljeanius (Eric Gallager) | |
Port: | sundials sundials2 |
Description
Catalina 10.15.7
$ sudo port upgrade outdated Password: ---> Computing dependencies for ocaml-dune ---> Fetching archive for ocaml-dune ---> Attempting to fetch ocaml-dune-2.8.4_0.darwin_19.x86_64.tbz2 from https://mse.uk.packages.macports.org/ocaml-dune ---> Attempting to fetch ocaml-dune-2.8.4_0.darwin_19.x86_64.tbz2 from https://cph.dk.packages.macports.org/ocaml-dune ---> Attempting to fetch ocaml-dune-2.8.4_0.darwin_19.x86_64.tbz2 from https://packages.macports.org/ocaml-dune ---> Fetching distfiles for ocaml-dune ---> Attempting to fetch dune-2.8.4.tar.gz from https://github.com/ocaml/dune/tarball/2.8.4 ---> Verifying checksums for ocaml-dune ---> Extracting ocaml-dune ---> Applying patches to ocaml-dune ---> Configuring ocaml-dune ---> Building ocaml-dune ---> Staging ocaml-dune into destroot ---> Installing ocaml-dune @2.8.4_0 ---> Cleaning ocaml-dune ---> Computing dependencies for ocaml-dune ---> Deactivating ocaml-dune @1.11.2_0 ---> Cleaning ocaml-dune ---> Activating ocaml-dune @2.8.4_0 ---> Cleaning ocaml-dune ---> Computing dependencies for sundials Error: Can't install sundials because conflicting ports are active: sundials2 Error: Problem while installing sundials Error: Follow https://guide.macports.org/#project.tickets to report a bu
Change History (10)
comment:1 Changed 4 years ago by MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)
Cc: | MarcusCalhoun-Lopez added |
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comment:2 Changed 4 years ago by ryandesign (Ryan Carsten Schmidt)
comment:3 Changed 4 years ago by ryandesign (Ryan Carsten Schmidt)
Keywords: | sundials removed |
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comment:4 Changed 4 years ago by dbl001 (dbl)
Something is wrong. Any recommendations?
$ port deps sundials2 Full Name: sundials2 @2.7.0_3+accelerate+gfortran+mpich Build Dependencies: cmake, gcc10 Library Dependencies: SuiteSparse_KLU, libgcc, libgcc10, mpich-default $ port deps sundials Full Name: sundials @5.7.0_0+accelerate+gfortran+mpich Build Dependencies: cmake, gcc10 Library Dependencies: SuiteSparse_KLU, libgcc, libgcc10, mpich-default $ sudo port uninstall sundials $ sudo port list sundials sundials @5.7.0 math/sundials $ sudo port uninstall sundials -v $ port info sundials sundials @5.7.0 (math, devel) Variants: [+]accelerate, atlas, clang10, clang11, clang50, clang60, clang70, clang80, clang90, clangdevel, debug, doc, examples, g95, gcc10, gcc5, gcc6, gcc7, gcc8, gcc9, gccdevel, [+]gfortran, [+]mpich, openblas, openmpi, universal Description: SUNDIALS consists of the following five solvers: CVODE solves initial value problems for ordinary differential equation (ODE) systems. CVODES solves ODE systems and includes sensitivity analysis capabilities (forward and adjoint). IDA solves initial value problems for differential-algebraic equation (DAE) systems. IDAS solves DAE systems and includes sensitivity analysis capabilities (forward and adjoint). KINSOL solves nonlinear algebraic systems. Homepage: https://computation.llnl.gov/projects/sundials Build Dependencies: cmake, gcc10 Library Dependencies: SuiteSparse_KLU, libgcc, libgcc10, mpich-default Conflicts with: sundials2 Platforms: darwin License: BSD Maintainers: none $ sudo port -v uninstall sundials Password: sundials is not installed $ sudo port -v list sundials sundials @5.7.0 math/sundials $ sudo port upgrade outdated ---> Computing dependencies for sundials Error: Can't install sundials because conflicting ports are active: sundials2 Error: Problem while installing sundials Error: Follow https://guide.macports.org/#project.tickets to report a bug.
comment:5 follow-up: 7 Changed 4 years ago by ryandesign (Ryan Carsten Schmidt)
Cc: | robwgla Schamschula added |
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Has duplicate #62529.
@dbl001, I'm not sure what you're trying to show us with that terminal output. Perhaps a source of confusion is that port list
shows you what is available, not what is installed. To see what is installed, use port installed
. Perhaps an additional source of confusion is that port deps
shows you a port's dependencies, not its dependents. To show dependents, use the depends:
selector:
$ port installed depends:sundials2 The following ports are currently installed: octave @6.2.0_0+accelerate+app+docs+gfortran+graphicsmagick+qt5+sound+sundials (active)
I suspect that what has happened is that you both have octave installed, and in version @6.2.0_1 octave changed from using sundials2 to sundials. A simple attempt to upgrade octave would therefore fail because you already have sundials2 installed and therefore cannot install octave's new dependency sundials because of the conflict.
Assuming you have no other ports installed that depend on sundials2, you could deactivate the old octave and its sundials2 dependency:
sudo port -f deactivate octave sundials2
Then you can upgrade octave which will install its new sundials dependency:
sudo port upgrade octave
comment:6 Changed 4 years ago by dbl001 (dbl)
I suspect that what has happened is that you both have octave installed, and in version @6.2.0_1 octave changed from using sundials2 to sundials. A simple attempt to upgrade octave would therefore fail because you already have sundials2 installed and therefore cannot install octave's new dependency sundials because of the conflict.
That is correct. It's resolved.
Thanks!
comment:7 Changed 4 years ago by robwgla
Replying to ryandesign:
Has duplicate #62529.
...
Assuming you have no other ports installed that depend on sundials2, you could deactivate the old octave and its sundials2 dependency:
sudo port -f deactivate octave sundials2Then you can upgrade octave which will install its new sundials dependency:
sudo port upgrade octave
The proposed solution worked for me. Thanks.
comment:8 Changed 4 years ago by cooljeanius (Eric Gallager)
Cc: | cooljeanius added |
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comment:9 Changed 3 years ago by cooljeanius (Eric Gallager)
So... somehow this conflict got ignored, and I managed to get both sundials ports installed simultaneously? I get a failure on activation now instead:
x ./opt/local/include/cvode/cvode_sptfqmr.h DEBUG: Image error: /opt/local/include/arkode/arkode.h is being used by the active sundials port. Please deactivate this port first, or use 'port -f activate sundials2' to force the activation. invoked from within "throw registry::image-error "Image error: $file is being used by the active [$owner name] port. Please deactivate this port first, or use 'port -f ac..." ("foreach" body line 45) invoked from within "foreach file $imagefiles { set srcfile "${extracted_dir}${file}" # To be able to install links, we test if we can lst..." invoked from within "registry::write { foreach file $imagefiles { set srcfile "${extracted_dir}${file}" # To be able to instal..." invoked from within "try { registry::write { foreach file $imagefiles { set srcfile "${extracted_dir}${file}" # To be ..." (procedure "_activate_contents" line 21) invoked from within "_activate_contents $requested $rename_list" (procedure "activate" line 63) invoked from within "activate $name "" "" 0 $optionslist" (procedure "portimage::activate_composite" line 3) invoked from within "portimage::activate_composite $portname $composite_version [array get options]" Error: port activate failed: Image error: /opt/local/include/arkode/arkode.h is being used by the active sundials port. Please deactivate this port first, or use 'port -f activate sundials2' to force the activation.
comment:10 Changed 2 years ago by mascguy (Christopher Nielsen)
Resolution: | → fixed |
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Status: | new → closed |
The various sundials
ports are now segregated, eliminating these headaches. Fixed per issue:63631
The message is clear. sundials and sundials2 conflict. Please choose which one you would like to use and remove the other.