Opened 3 years ago
Closed 3 years ago
#63233 closed defect (fixed)
Unable to Upgrade py39-scipy on Lion. Fails to Build.
Reported by: | RobK88 | Owned by: | kencu (Ken) |
---|---|---|---|
Priority: | Normal | Milestone: | |
Component: | ports | Version: | 2.7.1 |
Keywords: | lion | Cc: | michaelld@… |
Port: | py39-scipy |
Description
I am unable to upgrade py39-scipy. It fails to build. I will attach main.log
bash-3.2$ port outdated The following installed ports are outdated: py39-scipy 1.6.3_0 < 1.7.0_0 bash-3.2$ sudo port upgrade -v outdated ---> Computing dependencies for py39-scipy ---> Fetching distfiles for py39-scipy ---> Verifying checksums for py39-scipy ---> Extracting py39-scipy ---> Applying patches to py39-scipy ---> Configuring py39-scipy ---> Building py39-scipy Error: Failed to build py39-scipy: command execution failed Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py39-scipy/main.log for details. Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug. bash-3.2$
Attachments (1)
Change History (6)
Changed 3 years ago by RobK88
comment:1 Changed 3 years ago by RobK88
I tried the upgrade the port again. Here is some more useful info:
bash-3.2$ port outdated The following installed ports are outdated: py39-scipy 1.6.3_0 < 1.7.0_0 bash-3.2$ bash-3.2$ sudo port clean py39-scipy ---> Cleaning py39-scipy bash-3.2$ bash-3.2$ sudo port -v upgrade outdated etc etc. clang++-mp-9.0: scipy/interpolate/_rbfinterp_pythran.cpp In file included from scipy/interpolate/_rbfinterp_pythran.cpp:26: In file included from /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/pythonic/include/numpy/exp.hpp:8: In file included from /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/xsimd.hpp:17: In file included from /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_math.hpp:23: /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_scalar.hpp:360:9: error: use of undeclared identifier '__sincosf'; did you mean 'sincos'? __sincosf(val, &s, &c); ^~~~~~~~~ sincos /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_scalar.hpp:357:17: note: 'sincos' declared here inline void sincos(float val, float&s, float& c) ^ /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_scalar.hpp:360:24: error: non-const lvalue reference to type 'float' cannot bind to a temporary of type 'float *' __sincosf(val, &s, &c); ^~ /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_scalar.hpp:357:41: note: passing argument to parameter 's' here inline void sincos(float val, float&s, float& c) ^ /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_scalar.hpp:372:9: error: use of undeclared identifier '__sincos'; did you mean 'sincos'? __sincos(val, &s, &c); ^~~~~~~~ sincos /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_scalar.hpp:369:17: note: 'sincos' declared here inline void sincos(double val, double&s, double& c) ^ /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_scalar.hpp:372:23: error: non-const lvalue reference to type 'double' cannot bind to a temporary of type 'double *' __sincos(val, &s, &c); ^~ /opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran/xsimd/math/xsimd_scalar.hpp:369:43: note: passing argument to parameter 's' here inline void sincos(double val, double&s, double& c) ^ 4 errors generated. error: Command "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py39-scipy/work/compwrap/cxx/opt/local/bin/clang++-mp-9.0 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -pipe -Os -isysroot/ -I/opt/local/libexec/boost/1.71/include -I/opt/local/include -DENABLE_PYTHON_MODULE -D__PYTHRAN__=3 -DPYTHRAN_BLAS_NONE -I/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pythran -I/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.macosx-10.7-x86_64-3.9/numpy/distutils/include -I/opt/local/Library/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c scipy/interpolate/_rbfinterp_pythran.cpp -o build/temp.macosx-10.7-x86_64-3.9/scipy/interpolate/_rbfinterp_pythran.o -MMD -MF build/temp.macosx-10.7-x86_64-3.9/scipy/interpolate/_rbfinterp_pythran.o.d -std=c++11 -fno-math-errno -w -stdlib=libc++ -isysroot/ -msse -msse2 -msse3" failed with exit status 1 ########### EXT COMPILER OPTIMIZATION ########### Platform : Architecture: x64 Compiler : clang CPU baseline : Requested : 'min' Enabled : SSE SSE2 SSE3 Flags : -msse -msse2 -msse3 Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_KNL AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL Generated : none CCompilerOpt.cache_flush[804] : write cache to path -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py39-scipy/work/scipy-scipy-c3bac55/build/temp.macosx-10.7-x86_64-3.9/ccompiler_opt_cache_ext.py ########### CLIB COMPILER OPTIMIZATION ########### Platform : Architecture: x64 Compiler : clang CPU baseline : Requested : 'min' Enabled : SSE SSE2 SSE3 Flags : -msse -msse2 -msse3 Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_KNL AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL Generated : none CCompilerOpt.cache_flush[804] : write cache to path -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py39-scipy/work/scipy-scipy-c3bac55/build/temp.macosx-10.7-x86_64-3.9/ccompiler_opt_cache_clib.py Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py39-scipy/work/scipy-1.7.0" && /opt/local/Library/Frameworks/Python.framework/Versions/3.9/bin/python3.9 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/local/bin/gfortran-mp-11 --f77flags='-m64 -Os -fno-second-underscore' --f90exec /opt/local/bin/gfortran-mp-11 --f90flags='-m64 -Os -fno-second-underscore' config --cc /opt/local/bin/clang-mp-9.0 --include-dirs /opt/local/include --library-dirs /opt/local/lib build -j4 Exit code: 1 Error: Failed to build py39-scipy: command execution failed Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py39-scipy/main.log for details. Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug.
comment:2 Changed 3 years ago by kencu (Ken)
MacPorts legacy support adds __sincos
support to systems <= 10.9.
https://github.com/macports/macports-legacy-support
You add it to the build by editing the Portfile bbedit `port file py39-scipy
and adding this near the top, at the proper place:
Portgroup legacysupport 1.1
as per this document:
comment:3 Changed 3 years ago by RobK88
Thanks again Ken.
That worked!!
But please note that there was a small typo in your last port. I needed to add "PortGroup legacysupport 1.1" to the portfile for py39-scipy. "PortGroup" not "Portgroup". Macports complained when I tried to use "Portgroup".
It looks like the portfile will need to be updated to close off this bug.
comment:4 Changed 3 years ago by kencu (Ken)
CamelCase -- love it :>
Actually I do like it. Just don't always remember it.
comment:5 Changed 3 years ago by kencu (Ken)
Owner: | set to kencu |
---|---|
Resolution: | → fixed |
Status: | new → closed |
main.log