Opened 3 years ago
Closed 3 years ago
#63831 closed defect (fixed)
postgresql13 depends on kerberos5 without declaring a dependency on it
| Reported by: | RobK88 | Owned by: | jyrkiwahlstedt |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.7.1 |
| Keywords: | Cc: | ||
| Port: | postgresql13 |
Description
I am unable to upgrade postgresql13 on Lion. Fails the configuration stage.
bash-3.2$ /usr/bin/sudo port -v upgrade postgresql13 ---> Computing dependencies for postgresql13. ---> Fetching distfiles for postgresql13 ---> Verifying checksums for postgresql13 ---> Checksumming postgresql-13.4.tar.bz2 ---> Extracting postgresql13 ---> Extracting postgresql-13.4.tar.bz2 Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_postgresql13/postgresql13/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/postgresql13/postgresql-13.4.tar.bz2' | /usr/bin/gnutar --no-same-owner -xf - ---> Applying patches to postgresql13 ---> Applying patch-no_doc.diff Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_postgresql13/postgresql13/work/postgresql-13.4" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/postgresql13/files/patch-no_doc.diff' patching file GNUmakefile.in ---> Configuring postgresql13 Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_postgresql13/postgresql13/work/postgresql-13.4" && ./configure --prefix=/opt/local PG_SYSROOT=disabled --sysconfdir=/opt/local/etc/postgresql13 --bindir=/opt/local/lib/postgresql13/bin --libdir=/opt/local/lib/postgresql13 --includedir=/opt/local/include/postgresql13 --datadir=/opt/local/share/postgresql13 --docdir=/opt/local/share/doc/postgresql13 --mandir=/opt/local/share/man --with-includes=/opt/local/include --with-libraries=/opt/local/lib --with-openssl --with-bonjour --with-readline --with-zlib --with-libxml --with-libxslt --with-gssapi --enable-thread-safety --with-uuid=e2fs --with-icu checking build system type... x86_64-apple-darwin11.4.2 checking host system type... x86_64-apple-darwin11.4.2 checking which template to use... darwin checking whether NLS is wanted... no checking for default port number... 5432 checking for block size... 8kB checking for segment size... 1GB checking for WAL block size... 8kB checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/clang accepts -g... yes checking for /usr/bin/clang option to accept ISO C89... none needed checking for /usr/bin/clang option to accept ISO C99... none needed checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/clang++ accepts -g... yes checking for gawk... gawk checking whether /usr/bin/clang supports -Wdeclaration-after-statement, for CFLAGS... yes checking whether /usr/bin/clang supports -Werror=vla, for CFLAGS... yes checking whether /usr/bin/clang supports -Wendif-labels, for CFLAGS... yes checking whether /usr/bin/clang++ supports -Wendif-labels, for CXXFLAGS... yes checking whether /usr/bin/clang supports -Wmissing-format-attribute, for CFLAGS... yes checking whether /usr/bin/clang++ supports -Wmissing-format-attribute, for CXXFLAGS... yes checking whether /usr/bin/clang supports -Wimplicit-fallthrough=3, for CFLAGS... no checking whether /usr/bin/clang++ supports -Wimplicit-fallthrough=3, for CXXFLAGS... no checking whether /usr/bin/clang supports -Wformat-security, for CFLAGS... yes checking whether /usr/bin/clang++ supports -Wformat-security, for CXXFLAGS... yes checking whether /usr/bin/clang supports -fno-strict-aliasing, for CFLAGS... yes checking whether /usr/bin/clang++ supports -fno-strict-aliasing, for CXXFLAGS... yes checking whether /usr/bin/clang supports -fwrapv, for CFLAGS... yes checking whether /usr/bin/clang++ supports -fwrapv, for CXXFLAGS... yes checking whether /usr/bin/clang supports -fexcess-precision=standard, for CFLAGS... no checking whether /usr/bin/clang++ supports -fexcess-precision=standard, for CXXFLAGS... no checking whether /usr/bin/clang supports -funroll-loops, for CFLAGS_VECTOR... yes checking whether /usr/bin/clang supports -ftree-vectorize, for CFLAGS_VECTOR... no checking whether /usr/bin/clang supports -Wunused-command-line-argument, for NOT_THE_CFLAGS... yes checking whether /usr/bin/clang supports -Wformat-truncation, for NOT_THE_CFLAGS... no checking whether /usr/bin/clang supports -Wstringop-truncation, for NOT_THE_CFLAGS... no checking whether the C compiler still works... yes checking how to run the C preprocessor... /usr/bin/clang -E checking for pkg-config... /opt/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking allow thread-safe client libraries... yes checking whether to build with ICU support... yes checking for icu-uc icu-i18n... yes checking whether to build with Tcl... no checking whether to build Perl modules... no checking whether to build Python modules... no checking whether to build with GSSAPI support... yes checking whether to build with PAM support... no checking whether to build with BSD Authentication support... no checking whether to build with LDAP support... no checking whether to build with Bonjour support... yes checking whether to build with OpenSSL support... yes checking whether to build with SELinux support... no checking whether to build with systemd support... no checking whether to build with XML support... yes checking for libxml-2.0 >= 2.6.23... yes checking for ld used by GCC... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking for ranlib... ranlib checking for strip... strip checking whether it is possible to strip libraries... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for tar... /usr/bin/tar checking whether ln -s works... yes checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p checking for bison... /opt/local/bin/bison configure: using bison (GNU Bison) 3.8.2 checking for flex... /opt/local/bin/flex configure: using flex 2.6.4 checking for perl... /opt/local/bin/perl configure: using perl 5.28.3 checking for a sed that does not truncate output... /opt/local/bin/gsed checking for grep that handles long lines and -e... /opt/local/bin/ggrep checking for egrep... /opt/local/bin/ggrep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether /usr/bin/clang is Clang... yes checking whether Clang needs flag to prevent "argument unused" warning when linking with -pthread... no checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for strerror_r... yes checking for getpwuid_r... yes checking for gethostbyname_r... no checking whether strerror_r returns int... yes checking for main in -lm... yes checking for library containing setproctitle... no checking for library containing dlopen... none required checking for library containing socket... none required checking for library containing shl_load... no checking for library containing getopt_long... none required checking for library containing shm_open... none required checking for library containing shm_unlink... none required checking for library containing clock_gettime... no checking for library containing fdatasync... none required checking for library containing sched_yield... none required checking for library containing gethostbyname_r... no checking for library containing shmget... none required checking for library containing backtrace_symbols... none required checking for library containing readline... -lreadline checking for inflate in -lz... yes checking for library containing gss_init_sec_context... -lgssapi_krb5 checking for CRYPTO_new_ex_data in -lcrypto... yes checking for SSL_new in -lssl... yes checking for X509_get_signature_nid... yes checking for OPENSSL_init_ssl... yes checking for BIO_get_data... yes checking for BIO_meth_new... yes checking for ASN1_STRING_get0_data... yes checking for CRYPTO_lock... no checking for xmlSaveToBuffer in -lxml2... yes checking for xsltCleanupGlobals in -lxslt... yes checking for uuid_generate... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking copyfile.h usability... yes checking copyfile.h presence... yes checking for copyfile.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking mbarrier.h usability... no checking mbarrier.h presence... no checking for mbarrier.h... no checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking sys/epoll.h usability... no checking sys/epoll.h presence... no checking for sys/epoll.h... no checking sys/event.h usability... yes checking sys/event.h presence... yes checking for sys/event.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/prctl.h usability... no checking sys/prctl.h presence... no checking for sys/prctl.h... no checking sys/procctl.h usability... no checking sys/procctl.h presence... no checking for sys/procctl.h... no checking sys/pstat.h usability... no checking sys/pstat.h presence... no checking for sys/pstat.h... no checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/sem.h usability... yes checking sys/sem.h presence... yes checking for sys/sem.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking sys/sockio.h usability... yes checking sys/sockio.h presence... yes checking for sys/sockio.h... yes checking sys/tas.h usability... no checking sys/tas.h presence... no checking for sys/tas.h... no checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ucred.h usability... no checking ucred.h presence... no checking for ucred.h... no checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking for net/if.h... yes checking for sys/ucred.h... yes checking for netinet/tcp.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking gssapi/gssapi.h usability... yes checking gssapi/gssapi.h presence... yes checking for gssapi/gssapi.h... yes checking openssl/ssl.h usability... yes checking openssl/ssl.h presence... yes checking for openssl/ssl.h... yes checking openssl/err.h usability... yes checking openssl/err.h presence... yes checking for openssl/err.h... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking libxslt/xslt.h usability... yes checking libxslt/xslt.h presence... yes checking for libxslt/xslt.h... yes checking dns_sd.h usability... yes checking dns_sd.h presence... yes checking for dns_sd.h... yes checking uuid/uuid.h usability... yes checking uuid/uuid.h presence... yes checking for uuid/uuid.h... yes checking whether byte ordering is bigendian... no checking for inline... inline checking for printf format archetype... printf checking for __func__... yes checking for _Static_assert... yes checking for typeof... typeof checking for __builtin_types_compatible_p... yes checking for __builtin_constant_p... yes checking for __builtin_unreachable... yes checking for computed goto support... yes checking for struct tm.tm_zone... yes checking for union semun... yes checking for struct sockaddr_un... yes checking for struct sockaddr_storage... yes checking for struct sockaddr_storage.ss_family... yes checking for struct sockaddr_storage.__ss_family... no checking for struct sockaddr_storage.ss_len... yes checking for struct sockaddr_storage.__ss_len... no checking for struct sockaddr.sa_len... yes checking for struct addrinfo... yes checking for locale_t... yes (in xlocale.h) checking for C/C++ restrict keyword... __restrict checking for struct cmsgcred... no checking for struct option... yes checking for z_streamp... yes checking whether assembler supports x86_64 popcntq... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking size of off_t... 0 checking size of bool... 0 checking for int timezone... yes checking types of arguments for accept()... int, int, struct sockaddr *, socklen_t * checking whether gettimeofday takes only one argument... no checking for wcstombs_l declaration... yes (in xlocale.h) checking for backtrace_symbols... yes checking for clock_gettime... no checking for copyfile... yes checking for fdatasync... yes checking for getifaddrs... yes checking for getpeerucred... no checking for getrlimit... yes checking for kqueue... yes checking for mbstowcs_l... yes checking for memset_s... no checking for poll... yes checking for posix_fallocate... no checking for ppoll... no checking for pstat... no checking for pthread_is_threaded_np... yes checking for readlink... yes checking for setproctitle... no checking for setproctitle_fast... no checking for setsid... yes checking for shm_open... yes checking for strchrnul... no checking for strsignal... yes checking for symlink... yes checking for sync_file_range... no checking for uselocale... yes checking for wcstombs_l... yes checking for __builtin_bswap16... no checking for __builtin_bswap32... yes checking for __builtin_bswap64... yes checking for __builtin_clz... yes checking for __builtin_ctz... yes checking for __builtin_popcount... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking how /usr/bin/clang reports undeclared, standard C functions... warning checking for posix_fadvise... no checking whether posix_fadvise is declared... no checking whether fdatasync is declared... no checking whether strlcat is declared... yes checking whether strlcpy is declared... yes checking whether strnlen is declared... yes checking whether F_FULLFSYNC is declared... yes checking whether RTLD_GLOBAL is declared... yes checking whether RTLD_NOW is declared... yes checking for struct sockaddr_in6... yes checking for PS_STRINGS... no checking for dlopen... yes checking for explicit_bzero... no checking for fls... yes checking for getopt... yes checking for getpeereid... yes checking for getrusage... yes checking for inet_aton... yes checking for link... yes checking for mkdtemp... yes checking for pread... yes checking for pwrite... yes checking for random... yes checking for srandom... yes checking for strlcat... yes checking for strlcpy... yes checking for strnlen... yes checking for strtof... yes checking for setenv... yes checking for unsetenv... yes checking for getaddrinfo... yes checking for getopt_long... yes checking for syslog... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking for opterr... yes checking for optreset... yes checking for strtoll... yes checking for strtoull... yes checking whether strtoll is declared... yes checking whether strtoull is declared... yes checking unicode/ucol.h usability... yes checking unicode/ucol.h presence... yes checking for unicode/ucol.h... yes checking for rl_completion_append_character... yes checking for rl_completion_suppress_quote... yes checking for rl_filename_quote_characters... yes checking for rl_filename_quoting_function... yes checking for rl_completion_matches... yes checking for rl_filename_completion_function... yes checking for rl_reset_screen_size... yes checking for append_history... yes checking for history_truncate_file... yes checking test program... failed configure: error: Could not execute a simple test program. This may be a problem related to locating shared libraries. Check the file 'config.log' for the exact reason. Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_postgresql13/postgresql13/work/postgresql-13.4" && ./configure --prefix=/opt/local PG_SYSROOT=disabled --sysconfdir=/opt/local/etc/postgresql13 --bindir=/opt/local/lib/postgresql13/bin --libdir=/opt/local/lib/postgresql13 --includedir=/opt/local/include/postgresql13 --datadir=/opt/local/share/postgresql13 --docdir=/opt/local/share/doc/postgresql13 --mandir=/opt/local/share/man --with-includes=/opt/local/include --with-libraries=/opt/local/lib --with-openssl --with-bonjour --with-readline --with-zlib --with-libxml --with-libxslt --with-gssapi --enable-thread-safety --with-uuid=e2fs --with-icu Exit code: 1 Error: Failed to configure postgresql13: consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_postgresql13/postgresql13/work/postgresql-13.4/config.log Error: Failed to configure postgresql13: configure failure: command execution failed Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_postgresql13/postgresql13/main.log for details. Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug. bash-3.2$
Attachments (2)
Change History (9)
comment:1 Changed 3 years ago by RobK88
comment:2 Changed 3 years ago by RobK88
| Summary: | Unable to Upgrade postgresql13 on Lion -- Configuration Stage Fails and Also BREAKS sudo port → Unable to Upgrade postgresql13 on Lion -- Configuration Stage Fails |
|---|
comment:3 Changed 3 years ago by ryandesign (Ryan Carsten Schmidt)
| Cc: | jwa@… removed |
|---|---|
| Owner: | set to jyrkiwahlstedt |
| Status: | new → assigned |
As the error message says, we'll need to see what's in config.log to know why this failed, so please attach that file.
comment:5 Changed 3 years ago by ryandesign (Ryan Carsten Schmidt)
| Keywords: | lion removed |
|---|---|
| Summary: | Unable to Upgrade postgresql13 on Lion -- Configuration Stage Fails → postgresql13 depends on kerberos5 without declaring a dependency on it |
The config.log shows that the problem is:
dyld: Library not loaded: /opt/local/lib/libcrypto.1.1.dylib Referenced from: /opt/local/lib/libgssapi_krb5.2.2.dylib Reason: image not found
Therefore, update the port that provides /opt/local/lib/libgssapi_krb5.2.2.dylib first:
$ port provides /opt/local/lib/libgssapi_krb5.2.2.dylib /opt/local/lib/libgssapi_krb5.2.2.dylib is provided by: kerberos5
The postgresql13 port does not mention that it depends upon kerberos5. It should either do that, or prevent kerberos5 from being used if present; either way, a revision increase is in order. There are other postgresql ports as well; they should all be audited for this problem and fixed as needed.
To avoid this problem until it is fixed, you could upgrade postgresql13 using trace mode to prevent it from finding the undeclared dependencies.
sudo port clean postgresql13 sudo port -t upgrade postgresql13
comment:6 Changed 3 years ago by RobK88
Thanks Ryan.
I was able to upgrade postgresql13 without having to resort to using the trace mode. I just upgraded kerberos5 first.
sudo port upgrade kerberos5 ---> Computing dependencies for kerberos5 ---> Fetching distfiles for kerberos5 ---> Verifying checksums for kerberos5 ---> Extracting kerberos5 ---> Applying patches to kerberos5 ---> Configuring kerberos5 Warning: Configuration logfiles contain indications of -Wimplicit-function-declaration; check that features were not accidentally disabled: bswap_64: found in krb5-1.19.2/src/config.log bswap_16: found in krb5-1.19.2/src/config.log ---> Building kerberos5 ---> Staging kerberos5 into destroot ---> Installing kerberos5 @1.19.2_1 ---> Cleaning kerberos5 ---> Computing dependencies for kerberos5 ---> Deactivating kerberos5 @1.19.2_0 ---> Cleaning kerberos5 ---> Activating kerberos5 @1.19.2_1 ---> Cleaning kerberos5 ---> Updating database of binaries ---> Scanning binaries for linking errors ---> Found 62 broken files, matching files to ports ---> Found 10 broken ports, determining rebuild order You can always run 'port rev-upgrade' again to fix errors. The following ports will be rebuilt: python27 @2.7.18 python37 @3.7.12 python38 @3.8.12 sudo @1.9.8p2 qpdf @10.3.2 NetSurf @3.10 rsync @3.2.3 libevent @2.1.12 ntp @4.2.8p15 postgresql13 @13.4 Continue? [Y/n]: Y etc etc ---> Computing dependencies for postgresql13 ---> Configuring postgresql13 Warning: Configuration logfiles contain indications of -Wimplicit-function-declaration; check that features were not accidentally disabled: _mm_crc32_u8: found in postgresql-13.4/config.log _mm_crc32_u32: found in postgresql-13.4/config.log ---> Building postgresql13 ---> Staging postgresql13 into destroot Warning: reinplace s#^([[:space:]]+)LDFLAGS =#\1LDFLAGS +=#g didn't change anything in /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_postgresql13/postgresql13/work/destroot/opt/local/lib/postgresql13/pgxs/src/Makefile.global ---> Installing postgresql13 @13.4_2 ---> Cleaning postgresql13 ---> Computing dependencies for postgresql13 ---> Deactivating postgresql13 @13.4_1 ---> Cleaning postgresql13 ---> Activating postgresql13 @13.4_2 ---> Cleaning postgresql13 ---> Updating database of binaries ---> Scanning binaries for linking errors etc
Please note that there are warning messages == Warning: Configuration logfiles contain indications of -Wimplicit-function-declaration etc.
I often see these warning messages. Looks like the developer may have forgotten to include or import header files. Please comment on whether I should be reporting these -Wimplicit-function-declaration warning messages.
Changed 3 years ago by RobK88
Propoed updated portfile which adds kerberos5 dependency
comment:7 Changed 3 years ago by Jyrki Wahlstedt <jyrki.wahlstedt@…>
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Please note that this bug may be related to #63832