Opened 2 years ago

Closed 2 years ago

#66059 closed defect (worksforme)

muscle: does not take the input file

Reported by: utpalh Owned by: reneeotten (Renee Otten)
Priority: Normal Milestone:
Component: ports Version:
Keywords: Cc:
Port: muscle

Description

error with input file

Change History (3)

comment:1 Changed 2 years ago by ryandesign (Ryan Carsten Schmidt)

Owner: set to reneeotten
Status: new → assigned
Summary: does not take the input file → muscle: does not take the input file
Type: submission → defect

We're going to need more information than that. What did you do? (Actual commands you ran.) What did you expect to happen? What actually happened? (Actual output you received.)

comment:2 Changed 2 years ago by reneeotten (Renee Otten)

I doubt this is an issue with the compilation or package in MacPorts. The typical usage of the program is: 

Align FASTA input, write aligned FASTA (AFA) output:
    muscle -align input.fa -output aln.afa

so just create a file with a few FASTA sequences and try this command (I just did and it works fine), if it doesn't for you than most likely your input file is not correct.

Of course feel free to provide any additional information, and if you can demonstrate an actual issue we can try to figure out if that's an MacPorts problem or an upstream problem.

comment:3 Changed 2 years ago by reneeotten (Renee Otten)

Resolution: → worksforme
Status: assigned → closed
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