Opened 21 months ago

Last modified 17 months ago

#67043 assigned defect

hdf5 does not build with +universal

Reported by: markghayden (Mark Hayden) Owned by: eborisch (Eric A. Borisch)
Priority: Normal Milestone:
Component: ports Version: 2.8.1
Keywords: Cc: Dave-Allured (Dave Allured)
Port: hdf5

Description (last modified by kencu (Ken))

HDF5 library won't build with +universal. The issue appears to be in "merging" the h5cc executables, which are bash scripts and differ in one line. Not sure what would be a good fix for this. See relevant portion of the log file below.

:info:destroot --->  Patching 2-h5cc: s:  +: :g
:debug:destroot Executing reinplace: /usr/bin/sed -E {s:  +: :g} </tmp/muniversal.4K8wcAj6/2-h5cc >@file14
:debug:destroot system: /usr/bin/cmp -s "/tmp/muniversal.4K8wcAj6/1-h5cc" "/tmp/muniversal.4K8wcAj6/2-h5cc"
:info:destroot Command failed: /usr/bin/cmp -s "/tmp/muniversal.4K8wcAj6/1-h5cc" "/tmp/muniversal.4K8wcAj6/2-h5cc"
:info:destroot Exit code: 1
:error:destroot Failed to destroot hdf5: h5cc differs in /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/destroot-arm64//opt/local/bin and /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/destroot-ppc-intel//opt/local/bin and cannot be merged
:debug:destroot Error code: NONE
:debug:destroot Backtrace: h5cc differs in /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/destroot-arm64//opt/local/bin and /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/destroot-ppc-intel//opt/local/bin and cannot be merged
:debug:destroot     while executing
:debug:destroot "$procedure $targetname"
:error:destroot See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/main.log for details.

Attachments (1)

main.log (4.2 MB) - added by markghayden (Mark Hayden) 21 months ago.
log file

Change History (5)

Changed 21 months ago by markghayden (Mark Hayden)

Attachment: main.log added

log file

comment:1 Changed 21 months ago by kencu (Ken)

Description: modified (diff)

comment:2 Changed 21 months ago by kencu (Ken)

someone will look, but the next step would be to diff the two scripts and see what the differences are

comment:3 Changed 21 months ago by jmroot (Joshua Root)

Owner: set to eborisch
Status: newassigned

comment:4 Changed 17 months ago by Dave-Allured (Dave Allured)

Cc: Dave-Allured added
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