Opened 19 months ago
Last modified 19 months ago
#67251 assigned defect
R fails to configure on Tiger: Failed to configure R: Invalid value for configure.compiler
| Reported by: | barracuda156 | Owned by: | kjellpk (Kjell Konis) |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.8.1 |
| Keywords: | tiger | Cc: | i0ntempest |
| Port: | R |
Description
version:1 :debug:clean Starting logging for R @4.2.3_1+builtin_lapack+cairo+gcc7+openmp+recommended+x11 :debug:sysinfo Mac OS X 10.4.11 (darwin/8.11.0) arch powerpc :debug:sysinfo MacPorts 2.8.0 :debug:sysinfo Xcode 2.5, CLT none :debug:sysinfo SDK 10.4 :debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 10.4 :msg:clean ---> Computing dependencies for R:info:clean .:debug:clean R has no conflicts :debug:clean Searching for dependency: pkgconfig :debug:clean Found Dependency: receipt exists for pkgconfig :debug:clean Searching for dependency: gcc7 :debug:clean Found Dependency: receipt exists for gcc7 :debug:clean Searching for dependency: readline :debug:clean Found Dependency: receipt exists for readline :debug:clean Searching for dependency: icu :debug:clean Found Dependency: receipt exists for icu :debug:clean Searching for dependency: libiconv :debug:clean Found Dependency: receipt exists for libiconv :debug:clean Searching for dependency: zlib :debug:clean Found Dependency: receipt exists for zlib :debug:clean Searching for dependency: pcre :debug:clean Found Dependency: receipt exists for pcre :debug:clean Searching for dependency: pcre2 :debug:clean Found Dependency: receipt exists for pcre2 :debug:clean Searching for dependency: libjpeg-turbo :debug:clean Found Dependency: receipt exists for libjpeg-turbo :debug:clean Searching for dependency: tiff :debug:clean Found Dependency: receipt exists for tiff :debug:clean Searching for dependency: libpng :debug:clean Found Dependency: receipt exists for libpng :debug:clean Searching for dependency: curl :debug:clean Found Dependency: receipt exists for curl :debug:clean Searching for dependency: less :debug:clean Found Dependency: receipt exists for less :debug:clean Searching for dependency: texinfo :debug:clean Found Dependency: receipt exists for texinfo :debug:clean Searching for dependency: bzip2 :debug:clean Found Dependency: receipt exists for bzip2 :debug:clean Searching for dependency: gzip :debug:clean Found Dependency: receipt exists for gzip :debug:clean Searching for dependency: zip :debug:clean Found Dependency: receipt exists for zip :debug:clean Searching for dependency: unzip :debug:clean Found Dependency: receipt exists for unzip :debug:clean Searching for dependency: gnutar :debug:clean Found Dependency: receipt exists for gnutar :debug:clean Searching for dependency: xz :debug:clean Found Dependency: receipt exists for xz :debug:clean Searching for dependency: libgcc :debug:clean Found Dependency: receipt exists for libgcc :debug:clean Searching for dependency: cairo :debug:clean Found Dependency: receipt exists for cairo :debug:clean Searching for dependency: pango :debug:clean Found Dependency: receipt exists for pango :debug:clean Searching for dependency: glib2 :debug:clean Found Dependency: receipt exists for glib2 :debug:clean Searching for dependency: freetype :debug:clean Found Dependency: receipt exists for freetype :debug:clean Searching for dependency: fontconfig :debug:clean Found Dependency: receipt exists for fontconfig :debug:clean Searching for dependency: gettext-runtime :debug:clean Found Dependency: receipt exists for gettext-runtime :debug:clean Searching for dependency: xorg-libsm :debug:clean Found Dependency: receipt exists for xorg-libsm :debug:clean Searching for dependency: xorg-libice :debug:clean Found Dependency: receipt exists for xorg-libice :debug:clean Searching for dependency: xorg-libX11 :debug:clean Found Dependency: receipt exists for xorg-libX11 :debug:clean Searching for dependency: xorg-libXt :debug:clean Found Dependency: receipt exists for xorg-libXt :debug:clean Searching for dependency: legacy-support :debug:clean Found Dependency: receipt exists for legacy-support :debug:main Executing org.macports.main (R) :debug:main dropping privileges: euid changed to 502, egid changed to 500. :debug:archivefetch archivefetch phase started at Mon Apr 17 03:21:59 CST 2023 :msg:archivefetch ---> Fetching archive for R :debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0 :debug:archivefetch Executing org.macports.archivefetch (R) :debug:archivefetch euid/egid changed to: 0/0 :debug:archivefetch chowned /opt/local/var/macports/incoming to macports :debug:archivefetch euid/egid changed to: 502/500 :info:archivefetch ---> R-4.2.3_1+builtin_lapack+cairo+gcc7+openmp+recommended+x11.darwin_8.ppc.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified :msg:archivefetch ---> Attempting to fetch R-4.2.3_1+builtin_lapack+cairo+gcc7+openmp+recommended+x11.darwin_8.ppc.tbz2 from http://packages.macports.org/R :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 :msg:archivefetch ---> Attempting to fetch R-4.2.3_1+builtin_lapack+cairo+gcc7+openmp+recommended+x11.darwin_8.ppc.tbz2 from http://nue.de.packages.macports.org/R :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 :msg:archivefetch ---> Attempting to fetch R-4.2.3_1+builtin_lapack+cairo+gcc7+openmp+recommended+x11.darwin_8.ppc.tbz2 from http://atl.us.packages.macports.org/R :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 :debug:archivefetch Privilege de-escalation not attempted as not running as root. :debug:fetch fetch phase started at Mon Apr 17 03:22:02 CST 2023 :notice:fetch ---> Fetching distfiles for R :debug:fetch Executing proc-pre-org.macports.fetch-fetch-0 :debug:fetch Executing org.macports.fetch (R) :info:fetch ---> R-4.2.3.tar.gz does not exist in /opt/local/var/macports/distfiles/R :notice:fetch ---> Attempting to fetch R-4.2.3.tar.gz from https://cran.rstudio.com/src/base/R-4/ :debug:fetch Privilege de-escalation not attempted as not running as root. :debug:checksum checksum phase started at Mon Apr 17 03:23:22 CST 2023 :notice:checksum ---> Verifying checksums for R :debug:checksum Executing org.macports.checksum (R) :info:checksum ---> Checksumming R-4.2.3.tar.gz :debug:checksum Calculated (rmd160) is c46686207d55e9f6fcd52049a8f1b7c542ad0483 :debug:checksum Correct (rmd160) checksum for R-4.2.3.tar.gz :debug:checksum Calculated (sha256) is 55e4a9a6d43be314e2c03d0266a6fa5444afdce50b303bfc3b82b3979516e074 :debug:checksum Correct (sha256) checksum for R-4.2.3.tar.gz :debug:checksum Calculated (size) is 34010655 :debug:checksum Correct (size) checksum for R-4.2.3.tar.gz :debug:checksum Privilege de-escalation not attempted as not running as root. :debug:extract extract phase started at Mon Apr 17 03:23:24 CST 2023 :notice:extract ---> Extracting R :debug:extract Executing org.macports.extract (R) :info:extract ---> Extracting R-4.2.3.tar.gz :debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/R/R-4.2.3.tar.gz' :debug:extract Environment: :debug:extract CC_PRINT_OPTIONS='YES' :debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS' :debug:extract CPATH='/opt/local/include' :debug:extract CPLUS_INCLUDE_PATH='/opt/local/include/LegacySupport' :debug:extract C_INCLUDE_PATH='/opt/local/include/LegacySupport' :debug:extract DEVELOPER_DIR='/Developer' :debug:extract LIBRARY_PATH='/opt/local/lib' :debug:extract MACOSX_DEPLOYMENT_TARGET='10.4' :debug:extract MACPORTS_LEGACY_SUPPORT_CPPFLAGS='-isystem/opt/local/include/LegacySupport' :debug:extract MACPORTS_LEGACY_SUPPORT_ENABLED='1' :debug:extract MACPORTS_LEGACY_SUPPORT_LDFLAGS='-L/opt/local/lib -lMacportsLegacySupport' :debug:extract OBJCPLUS_INCLUDE_PATH='/opt/local/include/LegacySupport' :debug:extract OBJC_INCLUDE_PATH='/opt/local/include/LegacySupport' :info:extract Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R/R-4.2.3.tar.gz' | /usr/bin/gnutar --no-same-owner -xf - :debug:extract system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R/R-4.2.3.tar.gz' | /usr/bin/gnutar --no-same-owner -xf - :info:extract /usr/bin/gnutar: Read 6656 bytes from - :debug:extract euid/egid changed to: 0/0 :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work to macports :debug:extract euid/egid changed to: 502/500 :debug:extract Privilege de-escalation not attempted as not running as root. :debug:patch patch phase started at Mon Apr 17 03:23:41 CST 2023 :debug:patch Executing org.macports.patch (R) :notice:patch ---> Applying patches to R :info:patch ---> Applying patch-curl.diff :debug:patch Environment: :debug:patch CC_PRINT_OPTIONS='YES' :debug:patch CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS' :debug:patch CPATH='/opt/local/include' :debug:patch DEVELOPER_DIR='/Developer' :debug:patch LIBRARY_PATH='/opt/local/lib' :debug:patch MACOSX_DEPLOYMENT_TARGET='10.4' :info:patch Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/math/R/files/patch-curl.diff' :debug:patch system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/math/R/files/patch-curl.diff' :info:patch patching file configure :debug:patch Executing proc-post-org.macports.patch-patch-0 :info:patch ---> Patching Rscript.c: s|R_HOME|"/opt/local/Library/Frameworks/R.framework/Versions/4.2/Resources"| :debug:patch Executing reinplace: /usr/bin/sed s|R_HOME|\"/opt/local/Library/Frameworks/R.framework/Versions/4.2/Resources\"| </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/unix/Rscript.c >@file14 :debug:patch euid/egid changed to: 0/0 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/unix/Rscript.c to macports :debug:patch euid/egid changed to: 502/500 :debug:patch euid/egid changed to: 0/0 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/unix/Rscript.c :debug:patch euid/egid changed to: 502/500 :info:patch ---> Patching Defn.h: s|<libintl.h>|"libintl.h"| :debug:patch Executing reinplace: /usr/bin/sed s|<libintl.h>|\"libintl.h\"| </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/include/Defn.h >@file14 :debug:patch euid/egid changed to: 0/0 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/include/Defn.h to macports :debug:patch euid/egid changed to: 502/500 :debug:patch euid/egid changed to: 0/0 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/include/Defn.h :debug:patch euid/egid changed to: 502/500 :info:patch ---> Patching localtime.c: s|/var/db/timezone/zoneinfo|/usr/share/zoneinfo|g :debug:patch Executing reinplace: /usr/bin/sed s|/var/db/timezone/zoneinfo|/usr/share/zoneinfo|g </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/extra/tzone/localtime.c >@file14 :debug:patch euid/egid changed to: 0/0 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/extra/tzone/localtime.c to macports :debug:patch euid/egid changed to: 502/500 :debug:patch euid/egid changed to: 0/0 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/extra/tzone/localtime.c :debug:patch euid/egid changed to: 502/500 :info:patch ---> Patching timezones.Rd: s|/var/db/timezone/zoneinfo|/usr/share/zoneinfo|g :debug:patch Executing reinplace: /usr/bin/sed s|/var/db/timezone/zoneinfo|/usr/share/zoneinfo|g </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/library/base/man/timezones.Rd >@file14 :debug:patch euid/egid changed to: 0/0 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/library/base/man/timezones.Rd to macports :debug:patch euid/egid changed to: 502/500 :debug:patch euid/egid changed to: 0/0 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/library/base/man/timezones.Rd :debug:patch euid/egid changed to: 502/500 :info:patch ---> Patching datetime.R: s|/var/db/timezone/zoneinfo|/usr/share/zoneinfo|g :debug:patch Executing reinplace: /usr/bin/sed s|/var/db/timezone/zoneinfo|/usr/share/zoneinfo|g </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/library/base/R/datetime.R >@file14 :debug:patch euid/egid changed to: 0/0 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/library/base/R/datetime.R to macports :debug:patch euid/egid changed to: 502/500 :debug:patch euid/egid changed to: 0/0 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.2.3/src/library/base/R/datetime.R :debug:patch euid/egid changed to: 502/500 :debug:patch Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Mon Apr 17 03:23:42 CST 2023 :notice:configure ---> Configuring R :error:configure Failed to configure R: Invalid value for configure.compiler: :debug:configure Error code: NONE :debug:configure Backtrace: Invalid value for configure.compiler: :debug:configure while executing :debug:configure "[ditem_key $ditem prerun] $targetname" :error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/main.log for details.
Change History (5)
comment:1 Changed 19 months ago by barracuda156
comment:2 follow-up: 5 Changed 19 months ago by kencu (Ken)
try disabling the openmp variant
base sets the min gcc to 8 for openmp >= 4.5, but Tiger currently has only up to gcc7, so there is no compiler that can satisfy the requirement.
comment:3 Changed 19 months ago by kencu (Ken)
comment:4 Changed 19 months ago by ryandesign (Ryan Carsten Schmidt)
| Cc: | i0ntempest added |
|---|---|
| Owner: | changed from i0ntempest to kjellpk |
comment:5 Changed 19 months ago by barracuda156
Replying to kencu:
try disabling the openmp variant
base sets the min gcc to 8 for openmp >= 4.5, but Tiger currently has only up to gcc7, so there is no compiler that can satisfy the requirement.
Thank you, will try that out.
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Worked with manual passing of
configure.compiler=macports-gcc-7on command line.