Opened 18 months ago
Last modified 17 months ago
#67521 assigned defect
Sometimes R fails to update dependencies when a package is installed, which may break the build, if such an update is required
| Reported by: | barracuda156 | Owned by: | |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.8.1 |
| Keywords: | Cc: | ryandesign (Ryan Carsten Schmidt), mascguy (Christopher Nielsen) | |
| Port: | R |
Description
I do not know why this happens, but it seems pretty random and does not depend on a specific system (i.e. occurs on all of my test systems). Happened quite a number of times, here is an example.
R-BiocStyle explicitly depends on R-bookdown: https://ports.macports.org/port/R-BiocStyle/details
Here I am installing R-BiocStyle, which is asked for by a port depending on it:
* building ‘BiocStyle_2.28.0.tar.gz’ ---> Building R-BiocStyle ---> Staging R-BiocStyle into destroot . changed gid expected 0 found 80 modified ./usr missing (created) . missing (directory not created: File exists) ./Applications missing (created) ./Developer missing (created) ./Library missing (created) . changed gid expected 80 found 0 modified ./bin missing (created) ./etc missing (created) ./include missing (created) ./lib missing (created) ./lib/pkgconfig missing (created) ./libexec missing (created) ./sbin missing (created) ./share missing (created) ./share/doc missing (created) ./share/info missing (created) ./share/man missing (created) ./share/man/cat1 missing (created) ./share/man/cat2 missing (created) ./share/man/cat3 missing (created) ./share/man/cat4 missing (created) ./share/man/cat5 missing (created) ./share/man/cat6 missing (created) ./share/man/cat7 missing (created) ./share/man/cat8 missing (created) ./share/man/cat9 missing (created) ./share/man/catl missing (created) ./share/man/catn missing (created) ./share/man/man1 missing (created) ./share/man/man2 missing (created) ./share/man/man3 missing (created) ./share/man/man4 missing (created) ./share/man/man5 missing (created) ./share/man/man6 missing (created) ./share/man/man7 missing (created) ./share/man/man8 missing (created) ./share/man/man9 missing (created) ./share/man/manl missing (created) ./share/man/mann missing (created) ./share/nls missing (created) ./share/nls/C missing (created) ./share/nls/af_ZA.ISO8859-1 missing (created) ./share/nls/af_ZA.ISO8859-15 missing (created) ./share/nls/bg_BG.CP1251 missing (created) ./share/nls/cs_CZ.ISO8859-2 missing (created) ./share/nls/da_DK.ISO8859-1 missing (created) ./share/nls/da_DK.ISO8859-15 missing (created) ./share/nls/de_AT.ISO8859-1 missing (created) ./share/nls/de_AT.ISO8859-15 missing (created) ./share/nls/de_CH.ISO8859-1 missing (created) ./share/nls/de_CH.ISO8859-15 missing (created) ./share/nls/de_DE.ISO8859-1 missing (created) ./share/nls/de_DE.ISO8859-15 missing (created) ./share/nls/el_GR.ISO8859-7 missing (created) ./share/nls/en_AU.ISO8859-1 missing (created) ./share/nls/en_AU.ISO8859-15 missing (created) ./share/nls/en_AU.US-ASCII missing (created) ./share/nls/en_CA.ISO8859-1 missing (created) ./share/nls/en_CA.ISO8859-15 missing (created) ./share/nls/en_CA.US-ASCII missing (created) ./share/nls/en_GB.ISO8859-1 missing (created) ./share/nls/en_GB.ISO8859-15 missing (created) ./share/nls/en_GB.US-ASCII missing (created) ./share/nls/en_NZ.ISO8859-1 missing (created) ./share/nls/en_NZ.ISO8859-15 missing (created) ./share/nls/en_NZ.US-ASCII missing (created) ./share/nls/en_US.ISO8859-1 missing (created) ./share/nls/en_US.ISO8859-15 missing (created) ./share/nls/es_ES.ISO8859-1 missing (created) ./share/nls/es_ES.ISO8859-15 missing (created) ./share/nls/et_EE.ISO8859-15 missing (created) ./share/nls/fi_FI.ISO8859-1 missing (created) ./share/nls/fi_FI.ISO8859-15 missing (created) ./share/nls/fr_BE.ISO8859-1 missing (created) ./share/nls/fr_BE.ISO8859-15 missing (created) ./share/nls/fr_CA.ISO8859-1 missing (created) ./share/nls/fr_CA.ISO8859-15 missing (created) ./share/nls/fr_CH.ISO8859-1 missing (created) ./share/nls/fr_CH.ISO8859-15 missing (created) ./share/nls/fr_FR.ISO8859-1 missing (created) ./share/nls/fr_FR.ISO8859-15 missing (created) ./share/nls/hi_IN.ISCII-DEV missing (created) ./share/nls/hr_HR.ISO8859-2 missing (created) ./share/nls/hu_HU.ISO8859-2 missing (created) ./share/nls/is_IS.ISO8859-1 missing (created) ./share/nls/is_IS.ISO8859-15 missing (created) ./share/nls/it_CH.ISO8859-1 missing (created) ./share/nls/it_CH.ISO8859-15 missing (created) ./share/nls/it_IT.ISO8859-1 missing (created) ./share/nls/it_IT.ISO8859-15 missing (created) ./share/nls/ja_JP.SJIS missing (created) ./share/nls/ja_JP.eucJP missing (created) ./share/nls/ko_KR.eucKR missing (created) ./share/nls/la_LN.ISO8859-1 missing (created) ./share/nls/la_LN.ISO8859-15 missing (created) ./share/nls/la_LN.ISO8859-2 missing (created) ./share/nls/la_LN.ISO8859-4 missing (created) ./share/nls/la_LN.US-ASCII missing (created) ./share/nls/lt_LT.ISO8859-4 missing (created) ./share/nls/nl_BE.ISO8859-1 missing (created) ./share/nls/nl_BE.ISO8859-15 missing (created) ./share/nls/nl_NL.ISO8859-1 missing (created) ./share/nls/nl_NL.ISO8859-15 missing (created) ./share/nls/no_NO.ISO8859-1 missing (created) ./share/nls/no_NO.ISO8859-15 missing (created) ./share/nls/pl_PL.ISO8859-2 missing (created) ./share/nls/pt_BR.ISO8859-1 missing (created) ./share/nls/pt_PT.ISO8859-1 missing (created) ./share/nls/pt_PT.ISO8859-15 missing (created) ./share/nls/ro_RO.ISO8859-2 missing (created) ./share/nls/ru_RU.CP866 missing (created) ./share/nls/ru_RU.ISO8859-5 missing (created) ./share/nls/ru_RU.KOI8-R missing (created) ./share/nls/sk_SK.ISO8859-2 missing (created) ./share/nls/sl_SI.ISO8859-2 missing (created) ./share/nls/sv_SE.ISO8859-1 missing (created) ./share/nls/sv_SE.ISO8859-15 missing (created) ./share/nls/tr_TR.ISO8859-9 missing (created) ./share/nls/uk_UA.ISO8859-5 missing (created) ./share/nls/uk_UA.KOI8-U missing (created) ./share/nls/zh_CN.eucCN missing (created) ./share/nls/zh_TW.Big5 missing (created) ./share/skel missing (created) ./var missing (created) ./var/cache missing (created) ./var/db missing (created) ./var/log missing (created) ./var/run missing (created) ./var/spool missing (created) ./www missing (created) xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/destroot/opt/local/Library/Frameworks/R.framework xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/destroot/opt/local/Library/Frameworks/R.framework/Versions xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3 xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/BiocStyle" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library ERROR: dependency ‘bookdown’ is not available for package ‘BiocStyle’ * removing ‘/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/BiocStyle’ Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/BiocStyle" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-BiocStyle/R-BiocStyle/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library Exit code: 1 Error: Failed to destroot R-BiocStyle: command execution failed
I.e. installation fails, complaining re missing R-bookdown. Now, why is it allegedly missing? Because it has been installed with R 4.2 and not yet updated, so it is broken for R. However, an update is in fact available, and Macports should simply update it (no, -n flag was not used).
Then, I call for an update manually, and it works normally:
36-140% sudo port -v upgrade R-bookdown
Warning: configured user/group macports does not exist, will build as root
---> Computing dependencies for R-bookdown.
---> Fetching distfiles for R-bookdown
---> bookdown_0.34.tar.gz does not exist in /opt/local/var/macports/distfiles/R-bookdown
---> Attempting to fetch bookdown_0.34.tar.gz from https://cran.r-project.org/src/contrib
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 838k 100 838k 0 0 318k 0 0:00:02 0:00:02 --:--:-- 318k
---> Verifying checksums for R-bookdown
---> Checksumming bookdown_0.34.tar.gz
---> Extracting R-bookdown
---> Extracting bookdown_0.34.tar.gz
After that, R-BiocStyle installs normally.
Any idea why this may be the case?
Change History (6)
comment:1 Changed 18 months ago by mascguy (Christopher Nielsen)
| Cc: | mascguy added |
|---|
comment:2 Changed 18 months ago by ryandesign (Ryan Carsten Schmidt)
comment:3 follow-up: 4 Changed 18 months ago by ryandesign (Ryan Carsten Schmidt)
R-BiocStyle depends directly on R-bookdown:
% port -q info --depends_lib --line r-biocstyle | tr ',' '\n' | grep -i r-bookdown R-bookdown
but R-bookdown eventually depends on R-BiocStyle:
% echo $(port rdeps r-bookdown | grep -i r-biocstyle) R-BiocStyle
comment:4 Changed 18 months ago by barracuda156
Replying to ryandesign:
R-BiocStyle depends directly on R-bookdown:
% port -q info --depends_lib --line r-biocstyle | tr ',' '\n' | grep -i r-bookdown R-bookdownbut R-bookdown eventually depends on R-BiocStyle:
% echo $(port rdeps r-bookdown | grep -i r-biocstyle) R-BiocStyle
Hmm, that should not be the case, unless test dependencies are counted (what R considers suggested, or soft).
comment:5 follow-up: 6 Changed 18 months ago by ryandesign (Ryan Carsten Schmidt)
Hmm, you're right, port rdeps does seem to include test dependencies, but those would only be used when running port test. When I look at only build, library, and runtime dependencies, I don't see R-BiocStyle in the rdeps of R-bookdown, so now I'm not sure what the problem is.
Next time you encounter the problem, please attach the main.log file, which should contain information about which dependencies were processed first.
comment:6 Changed 17 months ago by barracuda156
Replying to ryandesign:
Hmm, you're right,
port rdepsdoes seem to include test dependencies, but those would only be used when runningport test. When I look at only build, library, and runtime dependencies, I don't see R-BiocStyle in the rdeps of R-bookdown, so now I'm not sure what the problem is.Next time you encounter the problem, please attach the main.log file, which should contain information about which dependencies were processed first.
Okay I got another case on Rosetta.
---> Fetching distfiles for R-rsparse
---> rsparse-0.5.1.tar.gz does not exist in /opt/local/var/macports/distfiles/R-rsparse
---> Attempting to fetch rsparse-0.5.1.tar.gz from http://distfiles.macports.org/R-rsparse
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 408k 100 408k 0 0 93562 0 0:00:04 0:00:04 --:--:-- 117k
---> Verifying checksums for R-rsparse
---> Checksumming rsparse-0.5.1.tar.gz
---> Extracting R-rsparse
---> Extracting rsparse-0.5.1.tar.gz
Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R-rsparse/rsparse-0.5.1.tar.gz' | /usr/bin/gnutar --no-same-owner -xf -
---> Configuring R-rsparse
Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/rsparse-0.5.1" && /opt/local/bin/R CMD build . --no-manual --no-build-vignettes
* checking for file ‘./DESCRIPTION’ ... OK
* preparing ‘rsparse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Removed empty directory ‘rsparse/docs’
* building ‘rsparse_0.5.1.tar.gz’
---> Building R-rsparse
---> Staging R-rsparse into destroot
. changed
gid expected 0 found 80 modified
./usr missing (created)
. missing (directory not created: File exists)
./Applications missing (created)
./Developer missing (created)
./Library missing (created)
. changed
gid expected 80 found 0 modified
./bin missing (created)
./etc missing (created)
./include missing (created)
./lib missing (created)
./lib/pkgconfig missing (created)
./libexec missing (created)
./sbin missing (created)
./share missing (created)
./share/doc missing (created)
./share/info missing (created)
./share/man missing (created)
./share/man/cat1 missing (created)
./share/man/cat2 missing (created)
./share/man/cat3 missing (created)
./share/man/cat4 missing (created)
./share/man/cat5 missing (created)
./share/man/cat6 missing (created)
./share/man/cat7 missing (created)
./share/man/cat8 missing (created)
./share/man/cat9 missing (created)
./share/man/catl missing (created)
./share/man/catn missing (created)
./share/man/man1 missing (created)
./share/man/man2 missing (created)
./share/man/man3 missing (created)
./share/man/man4 missing (created)
./share/man/man5 missing (created)
./share/man/man6 missing (created)
./share/man/man7 missing (created)
./share/man/man8 missing (created)
./share/man/man9 missing (created)
./share/man/manl missing (created)
./share/man/mann missing (created)
./share/nls missing (created)
./share/nls/C missing (created)
./share/nls/af_ZA.ISO8859-1 missing (created)
./share/nls/af_ZA.ISO8859-15 missing (created)
./share/nls/bg_BG.CP1251 missing (created)
./share/nls/cs_CZ.ISO8859-2 missing (created)
./share/nls/da_DK.ISO8859-1 missing (created)
./share/nls/da_DK.ISO8859-15 missing (created)
./share/nls/de_AT.ISO8859-1 missing (created)
./share/nls/de_AT.ISO8859-15 missing (created)
./share/nls/de_CH.ISO8859-1 missing (created)
./share/nls/de_CH.ISO8859-15 missing (created)
./share/nls/de_DE.ISO8859-1 missing (created)
./share/nls/de_DE.ISO8859-15 missing (created)
./share/nls/el_GR.ISO8859-7 missing (created)
./share/nls/en_AU.ISO8859-1 missing (created)
./share/nls/en_AU.ISO8859-15 missing (created)
./share/nls/en_AU.US-ASCII missing (created)
./share/nls/en_CA.ISO8859-1 missing (created)
./share/nls/en_CA.ISO8859-15 missing (created)
./share/nls/en_CA.US-ASCII missing (created)
./share/nls/en_GB.ISO8859-1 missing (created)
./share/nls/en_GB.ISO8859-15 missing (created)
./share/nls/en_GB.US-ASCII missing (created)
./share/nls/en_NZ.ISO8859-1 missing (created)
./share/nls/en_NZ.ISO8859-15 missing (created)
./share/nls/en_NZ.US-ASCII missing (created)
./share/nls/en_US.ISO8859-1 missing (created)
./share/nls/en_US.ISO8859-15 missing (created)
./share/nls/es_ES.ISO8859-1 missing (created)
./share/nls/es_ES.ISO8859-15 missing (created)
./share/nls/et_EE.ISO8859-15 missing (created)
./share/nls/fi_FI.ISO8859-1 missing (created)
./share/nls/fi_FI.ISO8859-15 missing (created)
./share/nls/fr_BE.ISO8859-1 missing (created)
./share/nls/fr_BE.ISO8859-15 missing (created)
./share/nls/fr_CA.ISO8859-1 missing (created)
./share/nls/fr_CA.ISO8859-15 missing (created)
./share/nls/fr_CH.ISO8859-1 missing (created)
./share/nls/fr_CH.ISO8859-15 missing (created)
./share/nls/fr_FR.ISO8859-1 missing (created)
./share/nls/fr_FR.ISO8859-15 missing (created)
./share/nls/hi_IN.ISCII-DEV missing (created)
./share/nls/hr_HR.ISO8859-2 missing (created)
./share/nls/hu_HU.ISO8859-2 missing (created)
./share/nls/is_IS.ISO8859-1 missing (created)
./share/nls/is_IS.ISO8859-15 missing (created)
./share/nls/it_CH.ISO8859-1 missing (created)
./share/nls/it_CH.ISO8859-15 missing (created)
./share/nls/it_IT.ISO8859-1 missing (created)
./share/nls/it_IT.ISO8859-15 missing (created)
./share/nls/ja_JP.SJIS missing (created)
./share/nls/ja_JP.eucJP missing (created)
./share/nls/ko_KR.eucKR missing (created)
./share/nls/la_LN.ISO8859-1 missing (created)
./share/nls/la_LN.ISO8859-15 missing (created)
./share/nls/la_LN.ISO8859-2 missing (created)
./share/nls/la_LN.ISO8859-4 missing (created)
./share/nls/la_LN.US-ASCII missing (created)
./share/nls/lt_LT.ISO8859-4 missing (created)
./share/nls/nl_BE.ISO8859-1 missing (created)
./share/nls/nl_BE.ISO8859-15 missing (created)
./share/nls/nl_NL.ISO8859-1 missing (created)
./share/nls/nl_NL.ISO8859-15 missing (created)
./share/nls/no_NO.ISO8859-1 missing (created)
./share/nls/no_NO.ISO8859-15 missing (created)
./share/nls/pl_PL.ISO8859-2 missing (created)
./share/nls/pt_BR.ISO8859-1 missing (created)
./share/nls/pt_PT.ISO8859-1 missing (created)
./share/nls/pt_PT.ISO8859-15 missing (created)
./share/nls/ro_RO.ISO8859-2 missing (created)
./share/nls/ru_RU.CP866 missing (created)
./share/nls/ru_RU.ISO8859-5 missing (created)
./share/nls/ru_RU.KOI8-R missing (created)
./share/nls/sk_SK.ISO8859-2 missing (created)
./share/nls/sl_SI.ISO8859-2 missing (created)
./share/nls/sv_SE.ISO8859-1 missing (created)
./share/nls/sv_SE.ISO8859-15 missing (created)
./share/nls/tr_TR.ISO8859-9 missing (created)
./share/nls/uk_UA.ISO8859-5 missing (created)
./share/nls/uk_UA.KOI8-U missing (created)
./share/nls/zh_CN.eucCN missing (created)
./share/nls/zh_TW.Big5 missing (created)
./share/skel missing (created)
./var missing (created)
./var/cache missing (created)
./var/db missing (created)
./var/log missing (created)
./var/run missing (created)
./var/spool missing (created)
./www missing (created)
xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework
xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions
xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3
xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources
xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/rsparse-0.5.1" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
ERROR: dependencies ‘MatrixExtra’, ‘float’ are not available for package ‘rsparse’
* removing ‘/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/rsparse’
Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/rsparse-0.5.1" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
Exit code: 1
Error: Failed to destroot R-rsparse: command execution failed
Dependencies of R-rsparse in its portfile:
depends_lib-append port:R-data.table \
port:R-float \
port:R-lgr \
port:R-MatrixExtra \
port:R-Rcpp \
port:R-RcppArmadillo \
port:R-RhpcBLASctl
compilers.setup require_fortran
depends_test-append port:R-covr \
port:R-testthat
When I called after that sudo port -v upgrade R-MatrixExtra, updates proceeded:
macmini:~ svacchanda$ sudo port -v upgrade R-MatrixExtra Password: ---> Computing dependencies for R-float. ---> Fetching distfiles for R-float ---> float_0.3-1.tar.gz does not exist in /opt/local/var/macports/distfiles/R-float
Log for R-rsparse:
version:1
:debug:clean Starting logging for R-rsparse @0.5.1_1+gfortran
:debug:sysinfo Mac OS X 10.6.8 (darwin/10.8.0) arch powerpc
:debug:sysinfo MacPorts 2.8.1
:debug:sysinfo Xcode 3.2.6, CLT 1.0.0.9000000000.1.1248867338
:debug:sysinfo SDK 10.6
:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 10.6
:debug:clean Attempting ln -sf /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/R/R-rsparse/work
:debug:clean dropping privileges: euid changed to 502, egid changed to 505.
:debug:main Executing org.macports.main (R-rsparse)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:archivefetch archivefetch phase started at Sat Jun 10 06:17:02 CST 2023
:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
:debug:archivefetch Executing org.macports.archivefetch (R-rsparse)
:debug:archivefetch Privilege de-escalation not attempted as not running as root.
:debug:fetch fetch phase started at Sat Jun 10 06:17:02 CST 2023
:notice:fetch ---> Fetching distfiles for R-rsparse
:debug:fetch elevating privileges for fetch: euid changed to 0, egid changed to 0.
:debug:fetch dropping privileges: euid changed to 502, egid changed to 505.
:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
:debug:fetch Executing org.macports.fetch (R-rsparse)
:info:fetch ---> rsparse-0.5.1.tar.gz does not exist in /opt/local/var/macports/distfiles/R-rsparse
:notice:fetch ---> Attempting to fetch rsparse-0.5.1.tar.gz from http://distfiles.macports.org/R-rsparse
:debug:fetch Privilege de-escalation not attempted as not running as root.
:debug:checksum checksum phase started at Sat Jun 10 06:17:07 CST 2023
:notice:checksum ---> Verifying checksums for R-rsparse
:debug:checksum Executing org.macports.checksum (R-rsparse)
:info:checksum ---> Checksumming rsparse-0.5.1.tar.gz
:debug:checksum Calculated (rmd160) is 9edcd7b8417d2e62b44dcfacfb74f61f07515e3b
:debug:checksum Correct (rmd160) checksum for rsparse-0.5.1.tar.gz
:debug:checksum Calculated (sha256) is 9f57b0ab0a7bef3cad4216778a3e6d7e44037787491bcd594c12f92eefce02cf
:debug:checksum Correct (sha256) checksum for rsparse-0.5.1.tar.gz
:debug:checksum Calculated (size) is 417799
:debug:checksum Correct (size) checksum for rsparse-0.5.1.tar.gz
:debug:checksum Privilege de-escalation not attempted as not running as root.
:debug:extract extract phase started at Sat Jun 10 06:17:07 CST 2023
:notice:extract ---> Extracting R-rsparse
:debug:extract Executing org.macports.extract (R-rsparse)
:info:extract ---> Extracting rsparse-0.5.1.tar.gz
:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/R-rsparse/rsparse-0.5.1.tar.gz'
:debug:extract Environment:
:debug:extract CC_PRINT_OPTIONS='YES'
:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/.CC_PRINT_OPTIONS'
:debug:extract CPATH='/opt/local/include'
:debug:extract DEVELOPER_DIR='/Developer'
:debug:extract LIBRARY_PATH='/opt/local/lib'
:debug:extract MACOSX_DEPLOYMENT_TARGET='10.6'
:info:extract Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R-rsparse/rsparse-0.5.1.tar.gz' | /usr/bin/gnutar --no-same-owner -xf -
:debug:extract system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R-rsparse/rsparse-0.5.1.tar.gz' | /usr/bin/gnutar --no-same-owner -xf -
:debug:extract euid/egid changed to: 0/0
:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work to macports
:debug:extract euid/egid changed to: 502/505
:debug:extract extract.rename: Renaming rexyai-rsparse-3ecd3cd -> rsparse-0.5.1
:debug:extract Privilege de-escalation not attempted as not running as root.
:debug:patch patch phase started at Sat Jun 10 06:17:07 CST 2023
:debug:patch Executing org.macports.patch (R-rsparse)
:debug:patch Privilege de-escalation not attempted as not running as root.
:debug:configure configure phase started at Sat Jun 10 06:17:07 CST 2023
:notice:configure ---> Configuring R-rsparse
:debug:configure Preferred compilers: macports-gcc-12 macports-gcc-11 macports-gcc-10 macports-gcc-9 macports-gcc-8 macports-gcc-7 macports-gcc-6 macports-gcc-5 macports-clang-11 macports-clang-10 macports-clang-9.0 macports-clang-8.0 macports-clang-7.0 macports-clang-6.0 macports-clang-5.0
:debug:configure Using compiler 'MacPorts GCC 12'
:debug:configure Executing proc-pre-org.macports.configure-configure-0
:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: R-data.table R-float R-lgr R-MatrixExtra R-Rcpp R-RcppArmadillo R-RhpcBLASctl libgcc gcc12 R
:debug:configure R is installed with the following variants: +builtin_lapack+cairo+gcc12+openmp+recommended+tcltk+x11
:debug:configure required: recommended, forbidden:
:debug:configure accepted
:debug:configure Executing proc-pre-org.macports.configure-configure-1
:debug:configure compilers.enforce_c list:
:debug:configure compilers.enforce_fortran list:
:debug:configure compilers.enforce_some_fortran list:
:debug:configure Executing org.macports.configure (R-rsparse)
:debug:configure Environment:
:debug:configure CC='/opt/local/bin/gcc-mp-12'
:debug:configure CC_PRINT_OPTIONS='YES'
:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/.CC_PRINT_OPTIONS'
:debug:configure CFLAGS='-pipe -Os -arch ppc'
:debug:configure CPATH='/opt/local/include'
:debug:configure CPPFLAGS='-I/opt/local/include'
:debug:configure CXX='/opt/local/bin/g++-mp-12'
:debug:configure CXXFLAGS='-pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -arch ppc'
:debug:configure DEVELOPER_DIR='/Developer'
:debug:configure DYLD_LIBRARY_PATH='/opt/local/lib/libgcc'
:debug:configure F77='/opt/local/bin/gfortran-mp-12'
:debug:configure F90='/opt/local/bin/gfortran-mp-12'
:debug:configure F90FLAGS='-pipe -Os -m32'
:debug:configure FC='/opt/local/bin/gfortran-mp-12'
:debug:configure FCFLAGS='-pipe -Os -m32'
:debug:configure FFLAGS='-pipe -Os -m32'
:debug:configure INSTALL='/usr/bin/install -c'
:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath,/opt/local/lib/libgcc -arch ppc'
:debug:configure LIBRARY_PATH='/opt/local/lib'
:debug:configure MACOSX_DEPLOYMENT_TARGET='10.6'
:debug:configure OBJC='/opt/local/bin/gcc-mp-12'
:debug:configure OBJCFLAGS='-pipe -Os -arch ppc'
:debug:configure OBJCXX='/opt/local/bin/g++-mp-12'
:debug:configure OBJCXXFLAGS='-pipe -Os -D_GLIBCXX_USE_CXX11_ABI=0 -arch ppc'
:info:configure Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/rsparse-0.5.1" && /opt/local/bin/R CMD build . --no-manual --no-build-vignettes
:debug:configure system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/rsparse-0.5.1" && /opt/local/bin/R CMD build . --no-manual --no-build-vignettes
:info:configure * checking for file ‘./DESCRIPTION’ ... OK
:info:configure * preparing ‘rsparse’:
:info:configure * checking DESCRIPTION meta-information ... OK
:info:configure * cleaning src
:info:configure * running ‘cleanup’
:info:configure * checking for LF line-endings in source and make files and shell scripts
:info:configure * checking for empty or unneeded directories
:info:configure Removed empty directory ‘rsparse/docs’
:info:configure * building ‘rsparse_0.5.1.tar.gz’
:debug:configure Executing portconfigure::configure_finish
:debug:configure Privilege de-escalation not attempted as not running as root.
:debug:build build phase started at Sat Jun 10 06:17:11 CST 2023
:notice:build ---> Building R-rsparse
:debug:build Executing org.macports.build (R-rsparse)
:debug:build Privilege de-escalation not attempted as not running as root.
:debug:destroot destroot phase started at Sat Jun 10 06:17:11 CST 2023
:notice:destroot ---> Staging R-rsparse into destroot
:debug:destroot Can't run destroot under sudo without elevated privileges (due to mtree).
:debug:destroot Run destroot without sudo to avoid root privileges.
:debug:destroot Going to escalate privileges back to root.
:debug:destroot euid changed to: 0. egid changed to: 0.
:debug:destroot system -W /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot: /usr/sbin/mtree -e -U -f /opt/local/share/macports/install/macosx.mtree
:info:destroot . changed
:info:destroot gid expected 0 found 80 modified
:info:destroot ./usr missing (created)
:info:destroot . missing (directory not created: File exists)
:info:destroot ./Applications missing (created)
:info:destroot ./Developer missing (created)
:info:destroot ./Library missing (created)
:debug:destroot system -W /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local: /usr/sbin/mtree -e -U -f /opt/local/share/macports/install/prefix.mtree
:info:destroot . changed
:info:destroot gid expected 80 found 0 modified
:info:destroot ./bin missing (created)
:info:destroot ./etc missing (created)
:info:destroot ./include missing (created)
:info:destroot ./lib missing (created)
:info:destroot ./lib/pkgconfig missing (created)
:info:destroot ./libexec missing (created)
:info:destroot ./sbin missing (created)
:info:destroot ./share missing (created)
:info:destroot ./share/doc missing (created)
:info:destroot ./share/info missing (created)
:info:destroot ./share/man missing (created)
:info:destroot ./share/man/cat1 missing (created)
:info:destroot ./share/man/cat2 missing (created)
:info:destroot ./share/man/cat3 missing (created)
:info:destroot ./share/man/cat4 missing (created)
:info:destroot ./share/man/cat5 missing (created)
:info:destroot ./share/man/cat6 missing (created)
:info:destroot ./share/man/cat7 missing (created)
:info:destroot ./share/man/cat8 missing (created)
:info:destroot ./share/man/cat9 missing (created)
:info:destroot ./share/man/catl missing (created)
:info:destroot ./share/man/catn missing (created)
:info:destroot ./share/man/man1 missing (created)
:info:destroot ./share/man/man2 missing (created)
:info:destroot ./share/man/man3 missing (created)
:info:destroot ./share/man/man4 missing (created)
:info:destroot ./share/man/man5 missing (created)
:info:destroot ./share/man/man6 missing (created)
:info:destroot ./share/man/man7 missing (created)
:info:destroot ./share/man/man8 missing (created)
:info:destroot ./share/man/man9 missing (created)
:info:destroot ./share/man/manl missing (created)
:info:destroot ./share/man/mann missing (created)
:info:destroot ./share/nls missing (created)
:info:destroot ./share/nls/C missing (created)
:info:destroot ./share/nls/af_ZA.ISO8859-1 missing (created)
:info:destroot ./share/nls/af_ZA.ISO8859-15 missing (created)
:info:destroot ./share/nls/bg_BG.CP1251 missing (created)
:info:destroot ./share/nls/cs_CZ.ISO8859-2 missing (created)
:info:destroot ./share/nls/da_DK.ISO8859-1 missing (created)
:info:destroot ./share/nls/da_DK.ISO8859-15 missing (created)
:info:destroot ./share/nls/de_AT.ISO8859-1 missing (created)
:info:destroot ./share/nls/de_AT.ISO8859-15 missing (created)
:info:destroot ./share/nls/de_CH.ISO8859-1 missing (created)
:info:destroot ./share/nls/de_CH.ISO8859-15 missing (created)
:info:destroot ./share/nls/de_DE.ISO8859-1 missing (created)
:info:destroot ./share/nls/de_DE.ISO8859-15 missing (created)
:info:destroot ./share/nls/el_GR.ISO8859-7 missing (created)
:info:destroot ./share/nls/en_AU.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_AU.ISO8859-15 missing (created)
:info:destroot ./share/nls/en_AU.US-ASCII missing (created)
:info:destroot ./share/nls/en_CA.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_CA.ISO8859-15 missing (created)
:info:destroot ./share/nls/en_CA.US-ASCII missing (created)
:info:destroot ./share/nls/en_GB.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_GB.ISO8859-15 missing (created)
:info:destroot ./share/nls/en_GB.US-ASCII missing (created)
:info:destroot ./share/nls/en_NZ.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_NZ.ISO8859-15 missing (created)
:info:destroot ./share/nls/en_NZ.US-ASCII missing (created)
:info:destroot ./share/nls/en_US.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_US.ISO8859-15 missing (created)
:info:destroot ./share/nls/es_ES.ISO8859-1 missing (created)
:info:destroot ./share/nls/es_ES.ISO8859-15 missing (created)
:info:destroot ./share/nls/et_EE.ISO8859-15 missing (created)
:info:destroot ./share/nls/fi_FI.ISO8859-1 missing (created)
:info:destroot ./share/nls/fi_FI.ISO8859-15 missing (created)
:info:destroot ./share/nls/fr_BE.ISO8859-1 missing (created)
:info:destroot ./share/nls/fr_BE.ISO8859-15 missing (created)
:info:destroot ./share/nls/fr_CA.ISO8859-1 missing (created)
:info:destroot ./share/nls/fr_CA.ISO8859-15 missing (created)
:info:destroot ./share/nls/fr_CH.ISO8859-1 missing (created)
:info:destroot ./share/nls/fr_CH.ISO8859-15 missing (created)
:info:destroot ./share/nls/fr_FR.ISO8859-1 missing (created)
:info:destroot ./share/nls/fr_FR.ISO8859-15 missing (created)
:info:destroot ./share/nls/hi_IN.ISCII-DEV missing (created)
:info:destroot ./share/nls/hr_HR.ISO8859-2 missing (created)
:info:destroot ./share/nls/hu_HU.ISO8859-2 missing (created)
:info:destroot ./share/nls/is_IS.ISO8859-1 missing (created)
:info:destroot ./share/nls/is_IS.ISO8859-15 missing (created)
:info:destroot ./share/nls/it_CH.ISO8859-1 missing (created)
:info:destroot ./share/nls/it_CH.ISO8859-15 missing (created)
:info:destroot ./share/nls/it_IT.ISO8859-1 missing (created)
:info:destroot ./share/nls/it_IT.ISO8859-15 missing (created)
:info:destroot ./share/nls/ja_JP.SJIS missing (created)
:info:destroot ./share/nls/ja_JP.eucJP missing (created)
:info:destroot ./share/nls/ko_KR.eucKR missing (created)
:info:destroot ./share/nls/la_LN.ISO8859-1 missing (created)
:info:destroot ./share/nls/la_LN.ISO8859-15 missing (created)
:info:destroot ./share/nls/la_LN.ISO8859-2 missing (created)
:info:destroot ./share/nls/la_LN.ISO8859-4 missing (created)
:info:destroot ./share/nls/la_LN.US-ASCII missing (created)
:info:destroot ./share/nls/lt_LT.ISO8859-4 missing (created)
:info:destroot ./share/nls/nl_BE.ISO8859-1 missing (created)
:info:destroot ./share/nls/nl_BE.ISO8859-15 missing (created)
:info:destroot ./share/nls/nl_NL.ISO8859-1 missing (created)
:info:destroot ./share/nls/nl_NL.ISO8859-15 missing (created)
:info:destroot ./share/nls/no_NO.ISO8859-1 missing (created)
:info:destroot ./share/nls/no_NO.ISO8859-15 missing (created)
:info:destroot ./share/nls/pl_PL.ISO8859-2 missing (created)
:info:destroot ./share/nls/pt_BR.ISO8859-1 missing (created)
:info:destroot ./share/nls/pt_PT.ISO8859-1 missing (created)
:info:destroot ./share/nls/pt_PT.ISO8859-15 missing (created)
:info:destroot ./share/nls/ro_RO.ISO8859-2 missing (created)
:info:destroot ./share/nls/ru_RU.CP866 missing (created)
:info:destroot ./share/nls/ru_RU.ISO8859-5 missing (created)
:info:destroot ./share/nls/ru_RU.KOI8-R missing (created)
:info:destroot ./share/nls/sk_SK.ISO8859-2 missing (created)
:info:destroot ./share/nls/sl_SI.ISO8859-2 missing (created)
:info:destroot ./share/nls/sv_SE.ISO8859-1 missing (created)
:info:destroot ./share/nls/sv_SE.ISO8859-15 missing (created)
:info:destroot ./share/nls/tr_TR.ISO8859-9 missing (created)
:info:destroot ./share/nls/uk_UA.ISO8859-5 missing (created)
:info:destroot ./share/nls/uk_UA.KOI8-U missing (created)
:info:destroot ./share/nls/zh_CN.eucCN missing (created)
:info:destroot ./share/nls/zh_TW.Big5 missing (created)
:info:destroot ./share/skel missing (created)
:info:destroot ./var missing (created)
:info:destroot ./var/cache missing (created)
:info:destroot ./var/db missing (created)
:info:destroot ./var/log missing (created)
:info:destroot ./var/run missing (created)
:info:destroot ./var/spool missing (created)
:info:destroot ./www missing (created)
:debug:destroot Executing proc-pre-org.macports.destroot-destroot-0
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
:debug:destroot Executing org.macports.destroot (R-rsparse)
:debug:destroot Environment:
:debug:destroot CC_PRINT_OPTIONS='YES'
:debug:destroot CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/.CC_PRINT_OPTIONS'
:debug:destroot CPATH='/opt/local/include'
:debug:destroot DEVELOPER_DIR='/Developer'
:debug:destroot DYLD_LIBRARY_PATH='/opt/local/lib/libgcc'
:debug:destroot LIBRARY_PATH='/opt/local/lib'
:debug:destroot MACOSX_DEPLOYMENT_TARGET='10.6'
:info:destroot Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/rsparse-0.5.1" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
:debug:destroot system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/rsparse-0.5.1" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
:info:destroot ERROR: dependencies ‘MatrixExtra’, ‘float’ are not available for package ‘rsparse’
:info:destroot * removing ‘/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/rsparse’
:info:destroot Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/rsparse-0.5.1" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
:info:destroot Exit code: 1
:error:destroot Failed to destroot R-rsparse: command execution failed
:debug:destroot Error code: CHILDSTATUS 13758 1
:debug:destroot Backtrace: command execution failed
:debug:destroot while executing
:debug:destroot "system {*}$notty {*}$callback {*}$nice $fullcmdstring"
:debug:destroot invoked from within
:debug:destroot "command_exec -callback portprogress::target_progress_callback destroot"
:debug:destroot (procedure "portdestroot::destroot_main" line 2)
:debug:destroot invoked from within
:debug:destroot "$procedure $targetname"
:error:destroot See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-rsparse/R-rsparse/main.log for details.
Note: See
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tickets.
Because there is a dependency cycle; MacPorts behavior is undefined in that situation.