Opened 12 months ago

Closed 11 months ago

Last modified 5 weeks ago

#67612 closed defect (fixed)

R-tzdb is broken on 10.7–10.11 (x86_64): Symbol not found: __ZSt19uncaught_exceptionsv

Reported by: barracuda156 Owned by:
Priority: Normal Milestone:
Component: ports Version: 2.8.1
Keywords: mountainlion Cc:
Port: R-tzdb

Description

version:1
:debug:main Starting logging for R-tzdb @0.4.0_0
:debug:sysinfo OS X 10.8.5 (darwin/12.6.0) arch i386
:debug:sysinfo MacPorts 2.8.1
:debug:sysinfo Xcode 5.1.1, CLT 5.1.0.0.1.1396320587
:debug:sysinfo SDK 10.8
:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 10.8
:msg:main --->  Computing dependencies for R-tzdb:info:main .:debug:main R-tzdb has no conflicts
:debug:main Searching for dependency: clang-15
:debug:main Found Dependency: receipt exists for clang-15
:debug:main Searching for dependency: R
:debug:main Found Dependency: receipt exists for R
:debug:main Searching for dependency: R-cpp11
:debug:main Found Dependency: receipt exists for R-cpp11
:debug:main Executing org.macports.main (R-tzdb)
:debug:main dropping privileges: euid changed to 502, egid changed to 501.
:debug:archivefetch archivefetch phase started at Tue Jun 13 08:56:05 CST 2023
:msg:archivefetch --->  Fetching archive for R-tzdb
:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
:debug:archivefetch Executing org.macports.archivefetch (R-tzdb)
:debug:archivefetch euid/egid changed to: 0/0
:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
:debug:archivefetch euid/egid changed to: 502/501
:info:archivefetch --->  R-tzdb-0.4.0_0.darwin_12.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
:msg:archivefetch --->  Attempting to fetch R-tzdb-0.4.0_0.darwin_12.x86_64.tbz2 from http://packages.macports.org/R-tzdb
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404
:msg:archivefetch --->  Attempting to fetch R-tzdb-0.4.0_0.darwin_12.x86_64.tbz2 from http://kmq.jp.packages.macports.org/R-tzdb
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404
:msg:archivefetch --->  Attempting to fetch R-tzdb-0.4.0_0.darwin_12.x86_64.tbz2 from http://pek.cn.packages.macports.org/macports/packages/R-tzdb
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404
:debug:archivefetch Privilege de-escalation not attempted as not running as root.
:debug:fetch fetch phase started at Tue Jun 13 08:56:07 CST 2023
:notice:fetch --->  Fetching distfiles for R-tzdb
:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
:debug:fetch Executing org.macports.fetch (R-tzdb)
:debug:fetch Privilege de-escalation not attempted as not running as root.
:debug:checksum checksum phase started at Tue Jun 13 08:56:07 CST 2023
:notice:checksum --->  Verifying checksums for R-tzdb
:debug:checksum Executing org.macports.checksum (R-tzdb)
:info:checksum --->  Checksumming tzdb_0.4.0.tar.gz
:debug:checksum Calculated (rmd160) is ad91d284b08c90f1b223adee9264dbd64842809b
:debug:checksum Correct (rmd160) checksum for tzdb_0.4.0.tar.gz
:debug:checksum Calculated (sha256) is 4253c66041bdddfd463c98183bf0052fbcacdb7c5cff9eadbb858b3dcf9d3a23
:debug:checksum Correct (sha256) checksum for tzdb_0.4.0.tar.gz
:debug:checksum Calculated (size) is 586327
:debug:checksum Correct (size) checksum for tzdb_0.4.0.tar.gz
:debug:checksum Privilege de-escalation not attempted as not running as root.
:debug:extract extract phase started at Tue Jun 13 08:56:07 CST 2023
:notice:extract --->  Extracting R-tzdb
:debug:extract Executing org.macports.extract (R-tzdb)
:info:extract --->  Extracting tzdb_0.4.0.tar.gz
:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/R-tzdb/tzdb_0.4.0.tar.gz'
:debug:extract Environment: 
:debug:extract CC_PRINT_OPTIONS='YES'
:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/.CC_PRINT_OPTIONS'
:debug:extract CPATH='/opt/local/include'
:debug:extract DEVELOPER_DIR='/Applications/Xcode.app/Contents/Developer'
:debug:extract LIBRARY_PATH='/opt/local/lib'
:debug:extract MACOSX_DEPLOYMENT_TARGET='10.8'
:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R-tzdb/tzdb_0.4.0.tar.gz' | /usr/bin/gnutar --no-same-owner -xf - 
:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R-tzdb/tzdb_0.4.0.tar.gz' | /usr/bin/gnutar --no-same-owner -xf - 
:debug:extract euid/egid changed to: 0/0
:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work to macports
:debug:extract euid/egid changed to: 502/501
:debug:extract Privilege de-escalation not attempted as not running as root.
:debug:patch patch phase started at Tue Jun 13 08:56:08 CST 2023
:debug:patch Executing org.macports.patch (R-tzdb)
:debug:patch Privilege de-escalation not attempted as not running as root.
:debug:configure configure phase started at Tue Jun 13 08:56:08 CST 2023
:notice:configure --->  Configuring R-tzdb
:debug:configure Preferred compilers: clang macports-clang-15 macports-clang-14 macports-clang-13 macports-clang-12 macports-clang-11 macports-clang-10 macports-clang-9.0 macports-clang-8.0 macports-clang-7.0 macports-clang-6.0 macports-clang-5.0 macports-clang-3.7 macports-clang-3.4
:debug:configure Using compiler 'MacPorts Clang 15'
:debug:configure Executing proc-pre-org.macports.configure-configure-0
:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: R-cpp11 clang-15 R
:debug:configure R is installed with the following variants: +builtin_lapack+cairo+gcc12+openmp+recommended+tcltk+x11
:debug:configure   required: recommended, forbidden: 
:debug:configure   accepted
:debug:configure Executing proc-pre-org.macports.configure-configure-1
:debug:configure compilers.enforce_c list: 
:debug:configure compilers.enforce_fortran list: 
:debug:configure compilers.enforce_some_fortran list: 
:debug:configure Executing org.macports.configure (R-tzdb)
:debug:configure Environment: 
:debug:configure CC='/opt/local/bin/clang-mp-15'
:debug:configure CC_PRINT_OPTIONS='YES'
:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/.CC_PRINT_OPTIONS'
:debug:configure CFLAGS='-pipe -Os -arch x86_64'
:debug:configure CPATH='/opt/local/include'
:debug:configure CPPFLAGS='-I/opt/local/include'
:debug:configure CXX='/opt/local/bin/clang++-mp-15'
:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
:debug:configure DEVELOPER_DIR='/Applications/Xcode.app/Contents/Developer'
:debug:configure F90FLAGS='-pipe -Os -m64'
:debug:configure FCFLAGS='-pipe -Os -m64'
:debug:configure FFLAGS='-pipe -Os -m64'
:debug:configure INSTALL='/usr/bin/install -c'
:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath,/opt/local/lib/libgcc -arch x86_64'
:debug:configure LIBRARY_PATH='/opt/local/lib'
:debug:configure MACOSX_DEPLOYMENT_TARGET='10.8'
:debug:configure OBJC='/opt/local/bin/clang-mp-15'
:debug:configure OBJCFLAGS='-pipe -Os -arch x86_64'
:debug:configure OBJCXX='/opt/local/bin/clang++-mp-15'
:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
:debug:configure __CFPREFERENCES_AVOID_DAEMON='1'
:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/tzdb" && /opt/local/bin/R CMD build . --no-manual --no-build-vignettes 
:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/tzdb" && /opt/local/bin/R CMD build . --no-manual --no-build-vignettes 
:info:configure * checking for file ‘./DESCRIPTION’ ... OK
:info:configure * preparing ‘tzdb’:
:info:configure * checking DESCRIPTION meta-information ... OK
:info:configure * cleaning src
:info:configure * checking for LF line-endings in source and make files and shell scripts
:info:configure * checking for empty or unneeded directories
:info:configure * building ‘tzdb_0.4.0.tar.gz’
:debug:configure Executing portconfigure::configure_finish
:debug:configure Privilege de-escalation not attempted as not running as root.
:debug:build build phase started at Tue Jun 13 08:56:09 CST 2023
:notice:build --->  Building R-tzdb
:debug:build Executing org.macports.build (R-tzdb)
:debug:build Privilege de-escalation not attempted as not running as root.
:debug:destroot destroot phase started at Tue Jun 13 08:56:09 CST 2023
:notice:destroot --->  Staging R-tzdb into destroot
:debug:destroot Can't run destroot under sudo without elevated privileges (due to mtree).
:debug:destroot Run destroot without sudo to avoid root privileges.
:debug:destroot Going to escalate privileges back to root.
:debug:destroot euid changed to: 0. egid changed to: 0.
:debug:destroot system -W /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot: /usr/sbin/mtree -e -U -f /opt/local/share/macports/install/macosx.mtree
:info:destroot . changed
:info:destroot 	gid expected 0 found 80 modified
:info:destroot ./usr missing (created)
:info:destroot . missing (directory not created: File exists)
:info:destroot ./Applications missing (created)
:info:destroot ./Developer missing (created)
:info:destroot ./Library missing (created)
:debug:destroot system -W /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local: /usr/sbin/mtree -e -U -f /opt/local/share/macports/install/prefix.mtree
:info:destroot . changed
:info:destroot 	gid expected 80 found 0 modified
:info:destroot ./bin missing (created)
:info:destroot ./etc missing (created)
:info:destroot ./include missing (created)
:info:destroot ./lib missing (created)
:info:destroot ./lib/pkgconfig missing (created)
:info:destroot ./libexec missing (created)
:info:destroot ./sbin missing (created)
:info:destroot ./share missing (created)
:info:destroot ./share/doc missing (created)
:info:destroot ./share/info missing (created)
:info:destroot ./share/man missing (created)
:info:destroot ./share/man/cat1 missing (created)
:info:destroot ./share/man/cat2 missing (created)
:info:destroot ./share/man/cat3 missing (created)
:info:destroot ./share/man/cat4 missing (created)
:info:destroot ./share/man/cat5 missing (created)
:info:destroot ./share/man/cat6 missing (created)
:info:destroot ./share/man/cat7 missing (created)
:info:destroot ./share/man/cat8 missing (created)
:info:destroot ./share/man/cat9 missing (created)
:info:destroot ./share/man/catl missing (created)
:info:destroot ./share/man/catn missing (created)
:info:destroot ./share/man/man1 missing (created)
:info:destroot ./share/man/man2 missing (created)
:info:destroot ./share/man/man3 missing (created)
:info:destroot ./share/man/man4 missing (created)
:info:destroot ./share/man/man5 missing (created)
:info:destroot ./share/man/man6 missing (created)
:info:destroot ./share/man/man7 missing (created)
:info:destroot ./share/man/man8 missing (created)
:info:destroot ./share/man/man9 missing (created)
:info:destroot ./share/man/manl missing (created)
:info:destroot ./share/man/mann missing (created)
:info:destroot ./share/nls missing (created)
:info:destroot ./share/nls/C missing (created)
:info:destroot ./share/nls/af_ZA.ISO8859-1 missing (created)
:info:destroot ./share/nls/af_ZA.ISO8859-15 missing (created)
:info:destroot ./share/nls/bg_BG.CP1251 missing (created)
:info:destroot ./share/nls/cs_CZ.ISO8859-2 missing (created)
:info:destroot ./share/nls/da_DK.ISO8859-1 missing (created)
:info:destroot ./share/nls/da_DK.ISO8859-15 missing (created)
:info:destroot ./share/nls/de_AT.ISO8859-1 missing (created)
:info:destroot ./share/nls/de_AT.ISO8859-15 missing (created)
:info:destroot ./share/nls/de_CH.ISO8859-1 missing (created)
:info:destroot ./share/nls/de_CH.ISO8859-15 missing (created)
:info:destroot ./share/nls/de_DE.ISO8859-1 missing (created)
:info:destroot ./share/nls/de_DE.ISO8859-15 missing (created)
:info:destroot ./share/nls/el_GR.ISO8859-7 missing (created)
:info:destroot ./share/nls/en_AU.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_AU.ISO8859-15 missing (created)
:info:destroot ./share/nls/en_AU.US-ASCII missing (created)
:info:destroot ./share/nls/en_CA.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_CA.ISO8859-15 missing (created)
:info:destroot ./share/nls/en_CA.US-ASCII missing (created)
:info:destroot ./share/nls/en_GB.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_GB.ISO8859-15 missing (created)
:info:destroot ./share/nls/en_GB.US-ASCII missing (created)
:info:destroot ./share/nls/en_NZ.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_NZ.ISO8859-15 missing (created)
:info:destroot ./share/nls/en_NZ.US-ASCII missing (created)
:info:destroot ./share/nls/en_US.ISO8859-1 missing (created)
:info:destroot ./share/nls/en_US.ISO8859-15 missing (created)
:info:destroot ./share/nls/es_ES.ISO8859-1 missing (created)
:info:destroot ./share/nls/es_ES.ISO8859-15 missing (created)
:info:destroot ./share/nls/et_EE.ISO8859-15 missing (created)
:info:destroot ./share/nls/fi_FI.ISO8859-1 missing (created)
:info:destroot ./share/nls/fi_FI.ISO8859-15 missing (created)
:info:destroot ./share/nls/fr_BE.ISO8859-1 missing (created)
:info:destroot ./share/nls/fr_BE.ISO8859-15 missing (created)
:info:destroot ./share/nls/fr_CA.ISO8859-1 missing (created)
:info:destroot ./share/nls/fr_CA.ISO8859-15 missing (created)
:info:destroot ./share/nls/fr_CH.ISO8859-1 missing (created)
:info:destroot ./share/nls/fr_CH.ISO8859-15 missing (created)
:info:destroot ./share/nls/fr_FR.ISO8859-1 missing (created)
:info:destroot ./share/nls/fr_FR.ISO8859-15 missing (created)
:info:destroot ./share/nls/hi_IN.ISCII-DEV missing (created)
:info:destroot ./share/nls/hr_HR.ISO8859-2 missing (created)
:info:destroot ./share/nls/hu_HU.ISO8859-2 missing (created)
:info:destroot ./share/nls/is_IS.ISO8859-1 missing (created)
:info:destroot ./share/nls/is_IS.ISO8859-15 missing (created)
:info:destroot ./share/nls/it_CH.ISO8859-1 missing (created)
:info:destroot ./share/nls/it_CH.ISO8859-15 missing (created)
:info:destroot ./share/nls/it_IT.ISO8859-1 missing (created)
:info:destroot ./share/nls/it_IT.ISO8859-15 missing (created)
:info:destroot ./share/nls/ja_JP.SJIS missing (created)
:info:destroot ./share/nls/ja_JP.eucJP missing (created)
:info:destroot ./share/nls/ko_KR.eucKR missing (created)
:info:destroot ./share/nls/la_LN.ISO8859-1 missing (created)
:info:destroot ./share/nls/la_LN.ISO8859-15 missing (created)
:info:destroot ./share/nls/la_LN.ISO8859-2 missing (created)
:info:destroot ./share/nls/la_LN.ISO8859-4 missing (created)
:info:destroot ./share/nls/la_LN.US-ASCII missing (created)
:info:destroot ./share/nls/lt_LT.ISO8859-4 missing (created)
:info:destroot ./share/nls/nl_BE.ISO8859-1 missing (created)
:info:destroot ./share/nls/nl_BE.ISO8859-15 missing (created)
:info:destroot ./share/nls/nl_NL.ISO8859-1 missing (created)
:info:destroot ./share/nls/nl_NL.ISO8859-15 missing (created)
:info:destroot ./share/nls/no_NO.ISO8859-1 missing (created)
:info:destroot ./share/nls/no_NO.ISO8859-15 missing (created)
:info:destroot ./share/nls/pl_PL.ISO8859-2 missing (created)
:info:destroot ./share/nls/pt_BR.ISO8859-1 missing (created)
:info:destroot ./share/nls/pt_PT.ISO8859-1 missing (created)
:info:destroot ./share/nls/pt_PT.ISO8859-15 missing (created)
:info:destroot ./share/nls/ro_RO.ISO8859-2 missing (created)
:info:destroot ./share/nls/ru_RU.CP866 missing (created)
:info:destroot ./share/nls/ru_RU.ISO8859-5 missing (created)
:info:destroot ./share/nls/ru_RU.KOI8-R missing (created)
:info:destroot ./share/nls/sk_SK.ISO8859-2 missing (created)
:info:destroot ./share/nls/sl_SI.ISO8859-2 missing (created)
:info:destroot ./share/nls/sv_SE.ISO8859-1 missing (created)
:info:destroot ./share/nls/sv_SE.ISO8859-15 missing (created)
:info:destroot ./share/nls/tr_TR.ISO8859-9 missing (created)
:info:destroot ./share/nls/uk_UA.ISO8859-5 missing (created)
:info:destroot ./share/nls/uk_UA.KOI8-U missing (created)
:info:destroot ./share/nls/zh_CN.eucCN missing (created)
:info:destroot ./share/nls/zh_TW.Big5 missing (created)
:info:destroot ./share/skel missing (created)
:info:destroot ./var missing (created)
:info:destroot ./var/cache missing (created)
:info:destroot ./var/db missing (created)
:info:destroot ./var/log missing (created)
:info:destroot ./var/run missing (created)
:info:destroot ./var/spool missing (created)
:info:destroot ./www missing (created)
:debug:destroot Executing proc-pre-org.macports.destroot-destroot-0
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources
:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
:debug:destroot Executing org.macports.destroot (R-tzdb)
:debug:destroot Environment: 
:debug:destroot CC_PRINT_OPTIONS='YES'
:debug:destroot CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/.CC_PRINT_OPTIONS'
:debug:destroot CPATH='/opt/local/include'
:debug:destroot DEVELOPER_DIR='/Applications/Xcode.app/Contents/Developer'
:debug:destroot LIBRARY_PATH='/opt/local/lib'
:debug:destroot MACOSX_DEPLOYMENT_TARGET='10.8'
:info:destroot Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/tzdb" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library 
:debug:destroot system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/tzdb" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library 
:info:destroot * installing *source* package ‘tzdb’ ...
:info:destroot ** package ‘tzdb’ successfully unpacked and MD5 sums checked
:info:destroot ** using staged installation
:info:destroot ** libs
:info:destroot using C++ compiler: ‘clang version 15.0.7’
:info:destroot using SDK: ‘’
:info:destroot /opt/local/bin/clang++-mp-15 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/cpp11/include' -I/opt/local/include   -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fPIC  -pipe -Os -stdlib=libc++ -arch x86_64  -c api.cpp -o api.o
:info:destroot /opt/local/bin/clang++-mp-15 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/cpp11/include' -I/opt/local/include   -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fPIC  -pipe -Os -stdlib=libc++ -arch x86_64  -c cpp11.cpp -o cpp11.o
:info:destroot /opt/local/bin/clang++-mp-15 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/cpp11/include' -I/opt/local/include   -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fPIC  -pipe -Os -stdlib=libc++ -arch x86_64  -c names.cpp -o names.o
:info:destroot /opt/local/bin/clang++-mp-15 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/cpp11/include' -I/opt/local/include   -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fPIC  -pipe -Os -stdlib=libc++ -arch x86_64  -c path.cpp -o path.o
:info:destroot /opt/local/bin/clang++-mp-15 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/cpp11/include' -I/opt/local/include   -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fPIC  -pipe -Os -stdlib=libc++ -arch x86_64  -c tz.cpp -o tz.o
:info:destroot /opt/local/bin/clang++-mp-15 -std=gnu++17 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/cpp11/include' -I/opt/local/include   -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fPIC  -pipe -Os -stdlib=libc++ -arch x86_64  -c version.cpp -o version.o
:info:destroot /opt/local/bin/clang++-mp-15 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/Library/Frameworks/R.framework/Resources/lib -L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath,/opt/local/lib/libgcc -arch x86_64 -o tzdb.so api.o cpp11.o names.o path.o tz.o version.o -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
:info:destroot installing to /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/00LOCK-tzdb/00new/tzdb/libs
:info:destroot ** R
:info:destroot ** inst
:info:destroot ** byte-compile and prepare package for lazy loading
:info:destroot ** help
:info:destroot *** installing help indices
:info:destroot ** building package indices
:info:destroot ** testing if installed package can be loaded from temporary location
:info:destroot Error: package or namespace load failed for ‘tzdb’ in dyn.load(file, DLLpath = DLLpath, ...):
:info:destroot  unable to load shared object '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/00LOCK-tzdb/00new/tzdb/libs/tzdb.so':
:info:destroot   dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/00LOCK-tzdb/00new/tzdb/libs/tzdb.so, 6): Symbol not found: __ZSt19uncaught_exceptionsv
:info:destroot   Referenced from: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/00LOCK-tzdb/00new/tzdb/libs/tzdb.so
:info:destroot   Expected in: flat namespace
:info:destroot  in /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tar
:info:destroot Error: loading failed
:info:destroot Execution halted
:info:destroot ERROR: loading failed
:info:destroot * removing ‘/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/tzdb’
:info:destroot Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/tzdb" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library 
:info:destroot Exit code: 1
:error:destroot Failed to destroot R-tzdb: command execution failed
:debug:destroot Error code: CHILDSTATUS 68390 1
:debug:destroot Backtrace: command execution failed
:debug:destroot     while executing
:debug:destroot "system {*}$notty {*}$callback {*}$nice $fullcmdstring"
:debug:destroot     invoked from within
:debug:destroot "command_exec -callback portprogress::target_progress_callback destroot"
:debug:destroot     (procedure "portdestroot::destroot_main" line 2)
:debug:destroot     invoked from within
:debug:destroot "$procedure $targetname"
:error:destroot See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-tzdb/R-tzdb/main.log for details.

Change History (5)

comment:1 Changed 12 months ago by barracuda156

Ok, actually it is broken from 10.7 to 10.11: https://ports.macports.org/port/R-tzdb/details

comment:2 Changed 12 months ago by barracuda156

Summary: R-tzdb is broken on 10.8.5 x86_64: Symbol not found: __ZSt19uncaught_exceptionsvR-tzdb is broken on 10.7–10.11 (x86_64): Symbol not found: __ZSt19uncaught_exceptionsv

comment:3 Changed 11 months ago by barracuda156

Last edited 5 weeks ago by ryandesign (Ryan Carsten Schmidt) (previous) (diff)

comment:4 Changed 11 months ago by barracuda156

Summary: R-tzdb is broken on 10.7–10.11 (x86_64): Symbol not found: __ZSt19uncaught_exceptionsv[FIXED] R-tzdb is broken on 10.7–10.11 (x86_64): Symbol not found: __ZSt19uncaught_exceptionsv

comment:5 Changed 11 months ago by reneeotten (Renee Otten)

Resolution: fixed
Status: newclosed
Summary: [FIXED] R-tzdb is broken on 10.7–10.11 (x86_64): Symbol not found: __ZSt19uncaught_exceptionsvR-tzdb is broken on 10.7–10.11 (x86_64): Symbol not found: __ZSt19uncaught_exceptionsv
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