[Resolved] h5fortran fails to configure on Sonoma: HDF5 C types failed check

[barracuda156]

See: ​https://github.com/geospace-code/h5fortran/issues/46

-- Performing Test HDF5_C_links
-- Performing Test HDF5_C_links - Success
-- Performing Test HDF5_Fortran_links
-- Performing Test HDF5_Fortran_links - Success
-- Found HDF5: /opt/local/lib/libhdf5_hl.dylib;/opt/local/lib/libhdf5.dylib (found version "1.14.2") found components: Fortran 
-- Performing Test hdf5_c_types
-- Performing Test hdf5_c_types - Failed
CMake Error at cmake/CheckHDF5.cmake:42 (message):
  HDF5 C types failed check
Call Stack (most recent call first):
  cmake/CheckHDF5.cmake:96 (check_hdf5_c)
  CMakeLists.txt:49 (check_hdf5)


-- Configuring incomplete, errors occurred!

[ryandesign (Ryan Carsten Schmidt)]

What do the CMake log files say about why "HDF5 C types failed check"?

[barracuda156]

CMake log

[Dave-Allured (Dave Allured)]

CMakeConfigureLog.txt​:

    ld: duplicate LC_RPATH '/opt/local/lib/libgcc' in '/opt/local/lib/libhdf5_fortran.310.dylib'
    clang: error: linker command failed with exit code 1 (use -v to see invocation)

May be fixed by ​https://github.com/macports/macports-ports/pull/21946. Waiting for Sonoma builder to come back on line.

Meanwhile you can try rebuilding your hdf5 from source on Sonoma and Xcode 15 linker, and see if that clears out the duplicate LC_RPATH.

[Dave-Allured (Dave Allured)]

​https://github.com/macports/macports-ports/pull/21946 did not fix the duplicate LC_RPATH's.

Now testing a compilers PG fix in ​https://github.com/macports/macports-ports/pull/21962.

[Dave-Allured (Dave Allured)]

@barracuda156, it looks like ​​https://github.com/macports/macports-ports/pull/21962 fixed the duplicate LC_RPATH's in HDF5 fortran libraries. Would you please update your hdf5 port on Sonoma, then retry h5fortran?

[barracuda156]

Replying to Dave-Allured:

@barracuda156, it looks like ​​https://github.com/macports/macports-ports/pull/21962 fixed the duplicate LC_RPATH's in HDF5 fortran libraries. Would you please update your hdf5 port on Sonoma, then retry h5fortran?

Thanks, will try now.

[barracuda156]

Yes, it works now, this ticket can be closed.