hdf5 @1.14.3_2+cxx+fortran+gfortran+hl+openmpi: duplicate LC_RPATH '/opt/local/lib/libgcc'

[chaochinyang (Chao-Chin Yang)]

I am trying to build parallel HDF5 with openmpi:

sudo port install hdf5 +openmpi

but it failed at config stage. It appears to be related with the code conftest.c.

I am using macports on my 16-inch MacBook Pro with M1 Max and latest macOS 14.2.1 (23C71).

Log files will be attached.

[kencu (Ken)]

errors: duplicate LC_RPATH '/opt/local/lib/libgcc' in '/opt/local/lib/openmpi-mp/libmpi_usempi_ignore_tkr.40.dylib

[jmon12]

I've had the similar issue with openmpi-default:

:info:configure configure: error: linking to Fortran libraries from C fails

I've tried the following combinations:

• openmpi-gcc13 and hdf5 +openmpi +gcc13 --> Fail to install openmpi-gcc13, see ticket ​https://trac.macports.org/ticket/68837
• openmpi-clang17 and hdf5 +openmpi +clang17 --> Fails to configure (like openmpi-default)
• openmpi-gcc12 and hdf5 +openmpi +gcc12 --> Fails to build (the final or an intermediary linking step). I need to investigate further.

Note that in any case, I'm setting openmpi's wrapper (see port notes openmpi-<compiler>), for example for gcc12: sudo port select --set mpi openmpi-gcc12-fortran. Anyway it shouldn't play a role.

For now, the only success I got is deactivating the fortran interface (e.g. the default behavior before ticket #67273), e.g. port install hdf5 +openmpi -fortran.

I'm using a MacBook Pro (2020) with intel CPU and MacOS 14.3.1 (23D60).

[ryandesign (Ryan Carsten Schmidt)]

Has duplicate #70361.