Opened 9 months ago

Last modified 9 months ago

#69403 assigned defect

superlu_dist @ 8.2.1_0+gcc10+openblas+openmpi : Undefined symbols

Reported by: lazersos (Samuel Lazerson) Owned by: MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)
Priority: Normal Milestone:
Component: ports Version: 2.9.1
Keywords: Cc:
Port: superlu_dist

Description

The superlu_dist port is failing to compile due to a werid MPI issue it appears:

install superlu_dist +gcc10+openblas+openmpi-accelerate
--->  Computing dependencies for superlu_dist
--->  Fetching archive for superlu_dist
--->  Attempting to fetch superlu_dist-8.2.1_0+gcc10+openblas+openmpi.darwin_21.x86_64.tbz2 from https://cph.dk.packages.macports.org/superlu_dist
--->  Attempting to fetch superlu_dist-8.2.1_0+gcc10+openblas+openmpi.darwin_21.x86_64.tbz2 from https://nue.de.packages.macports.org/superlu_dist
--->  Attempting to fetch superlu_dist-8.2.1_0+gcc10+openblas+openmpi.darwin_21.x86_64.tbz2 from https://fra.de.packages.macports.org/superlu_dist
--->  Fetching distfiles for superlu_dist
--->  Verifying checksums for superlu_dist
--->  Extracting superlu_dist
--->  Configuring superlu_dist
Error: Failed to configure superlu_dist: consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_superlu_dist/superlu_dist/work/build/CMakeFiles/CMakeError.log
Error: Failed to configure superlu_dist: configure failure: command execution failed
Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_superlu_dist/superlu_dist/main.log for details.
Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug.
Error: Processing of port superlu_dist failed

The actual error in the log file is:

Run Build Command(s):/usr/bin/make -f Makefile cmTC_7da32/fast && /Library/Developer/CommandLineTools/usr/bin/make  -f CMakeFiles/cmTC_7da32.dir/build.make CMakeFiles/cmTC_7da32.dir/build
Building CXX object CMakeFiles/cmTC_7da32.dir/test_mpi.cpp.o
/opt/local/bin/mpicxx-openmpi-gcc10   -pipe -Os -DNDEBUG -I/opt/local/include -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk  -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -mmacosx-version-min=12.0 -std=gnu++11 -o CMakeFiles/cmTC_7da32.dir/test_mpi.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_superlu_dist/superlu_dist/work/build/CMakeFiles/FindMPI/test_mpi.cpp
Linking CXX executable cmTC_7da32
/opt/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_7da32.dir/link.txt --verbose=1
/opt/local/bin/mpicxx-openmpi-gcc10 -pipe -Os -DNDEBUG -I/opt/local/include -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk  -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -mmacosx-version-min=12.0 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -stdlib=libc++ -Wl,-rpath,/opt/local/lib/libgcc -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk  -L/opt/local/lib CMakeFiles/cmTC_7da32.dir/test_mpi.cpp.o -o cmTC_7da32  /opt/local/lib/openmpi-gcc10/libmpi_cxx.dylib /opt/local/lib/openmpi-gcc10/libmpi.dylib 
Undefined symbols for architecture x86_64:
  "__ZNSt8ios_base4InitC1Ev", referenced from:
      __GLOBAL__sub_I_test_mpi.cpp in test_mpi.cpp.o
  "__ZNSt8ios_base4InitD1Ev", referenced from:
      __GLOBAL__sub_I_test_mpi.cpp in test_mpi.cpp.o
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
make[1]: *** [cmTC_7da32] Error 1
make: *** [cmTC_7da32/fast] Error 2

Change History (1)

comment:1 Changed 9 months ago by jmroot (Joshua Root)

Keywords: superlu_dist mpi removed
Owner: set to MarcusCalhoun-Lopez
Status: newassigned
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