py39-gcd port cannot be installed on OSX Sequoia 15.1 (24B2083)

[ungur (Liviu Ungur)]

I encountered the following issue when trying to install "py39-MDAnalysis" port.

liviuungur@Livius-MacBook-Pro Programs % sudo port install py39-MDAnalysis @2.0.0
--->  Computing dependencies for py39-MDAnalysis
The following dependencies will be installed: 
 py39-gsd
 py39-joblib
 py39-mmtf-python
 py39-msgpack
 py39-networkx
 py39-threadpoolctl
 py39-tqdm
Continue? [Y/n]: y
--->  Fetching archive for py39-gsd
--->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from https://packages.macports.org/py39-gsd
--->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from https://pek.cn.packages.macports.org/macports/packages/py39-gsd
--->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from https://kmq.jp.packages.macports.org/py39-gsd
--->  Fetching distfiles for py39-gsd
--->  Verifying checksums for py39-gsd
--->  Extracting py39-gsd
--->  Configuring py39-gsd
--->  Building py39-gsd
Error: Failed to build py39-gsd: command execution failed
Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_python_py-gsd/py39-gsd/main.log for details.
Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug.
Error: Processing of port py39-MDAnalysis failed

I clean the failed port and try again:

liviuungur@Livius-MacBook-Pro Programs % sudo port clean py39-gsd
--->  Cleaning py39-gsd
liviuungur@Livius-MacBook-Pro Programs % sudo port install py39-gsd
--->  Computing dependencies for py39-gsd
--->  Fetching archive for py39-gsd
--->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from https://packages.macports.org/py39-gsd
--->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from https://pek.cn.packages.macports.org/macports/packages/py39-gsd
--->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from https://kmq.jp.packages.macports.org/py39-gsd
--->  Fetching distfiles for py39-gsd
--->  Verifying checksums for py39-gsd
--->  Extracting py39-gsd
--->  Configuring py39-gsd
--->  Building py39-gsd
Error: Failed to build py39-gsd: command execution failed
Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_python_py-gsd/py39-gsd/main.log for details.
Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug.
Error: Processing of port py39-gsd failed
liviuungur@Livius-MacBook-Pro Programs %

py39-gsd @2.5.0 (python, science)
Variants:             universal

Description:          GSD (General Simulation Data) is a file format specification and a library to read and write it. The package also contains a python module that reads and writes hoomd schema gsd files with
                      an easy to use syntax.
Homepage:             https://gsd.readthedocs.io/

Build Dependencies:   py39-cython, py39-build, py39-installer, py39-setuptools, py39-wheel
Library Dependencies: py39-numpy, python39
Test Dependencies:    py39-pytest
Platforms:            darwin
License:              BSD
Maintainers:          Email: giovanni.bussi@gmail.com, GitHub: GiovanniBussi
                      Policy: openmaintainer

All dependencies for py39-gsd port were installed successfully.

[ungur (Liviu Ungur)]

error file