atlas: lapack.tgz checksum error

[sjbradtke@…]

Problem with the atlas dependency on lapack. Receive the following error messages:

sudo port install atlas
Password:
--->  Computing dependencies for atlas
--->  Verifying checksum(s) for atlas
Error: Checksum (md5) mismatch for lapack.tgz
Error: Checksum (sha1) mismatch for lapack.tgz
Error: Checksum (rmd160) mismatch for lapack.tgz
Error: Target org.macports.checksum returned: Unable to verify file checksums
Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
Error: Status 1 encountered during processing.

[skymoo (Adam Mercer)]

Don't forget to use wiki formatting, specify the port, and cc the maintainer.

Have you followed the FAQ on checksum errors: ​http://trac.macports.org/wiki/FAQ#checksums

[jwmarineiii@…]

A new version of lapack(3.2.2) was released on June 30, 2010. The md5 checksum in the portfile equals the md5 checksum of the previous version of lapack(3.2.1) that was released on April 17, 2009. The current and prior versions of lapack can be downloaded at ​http://www.netlib.org/lapack/index.html.

[skymoo (Adam Mercer)]

The attached patch should fix this

[macports@…]

Cc Me!

[michaelld (Michael Dickens)]

That diff (as checked in in r69457) doesn't work for me. I'm attaching YA diff that does.

[michaelld (Michael Dickens)]

Portfile diff to correct checksums for lapack 3.2.2 of 2010-06-30.

[michaelld (Michael Dickens)]

Cc Me!

[skymoo (Adam Mercer)]

Looks like theres been a stealth update of lapack :-(

[ryandesign (Ryan Carsten Schmidt)]

If anybody's having trouble applying this patch, the instructions for doing so are to download the patch (presumably to your Downloads folder) and then run:

cd $(port dir atlas)
sudo patch Portfile < ~/Downloads/patch-Portfile-lapack-checksums.diff

Works for me.

[skiptracer@…]

Applying the patch file with 'patch' failed for me:

patching file Portfile
Hunk #1 FAILED at 41.
1 out of 1 hunk FAILED -- saving rejects to file Portfile.rej

I had to apply it manually. After I had done that, I got the following error:

Error: Target org.macports.configure returned: error copying "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/lapack-3.2.1": no such file or directory

I had to open the Portfile again and change line 12:

set lapackversion   3.2.1

to

set lapackversion   3.2.2

Try the newly attached patch (patch-Portfile-lapack-checksums-version.diff). This is my first ever patch, so pardon me if I made a mistake.

[skiptracer@…]

patch for checksums and version number

[ryandesign (Ryan Carsten Schmidt)]

Replying to skiptracer@…:

Applying the patch file with 'patch' failed for me:

Ryan Stonecipher-Fisher already fixed this problem in r69509 on 2010-07-08. All you need to do is sudo port selfupdate to get it.

I had to open the Portfile again and change line 12:

Then your Portfile predated the change made in r69457 as well. Please update.

[mark.swanson.sw@…]

Nov 14, 2010 3.3.0 has been released so macports needs a checkum update. This is just a FYI...

[mark.swanson.sw@…]

Oops - this has already been addressed by several patches. Here's one: ​https://trac.macports.org/attachment/ticket/27319/patch-atals-lapack.3.3.0.diff Please close this. Sorry for the noise.