Opened 13 years ago

Closed 12 years ago

#32050 closed submission (fixed)

Portfile for RAxML 7.2.9

Reported by: mattoates@… Owned by: macports-tickets@…
Priority: Normal Milestone:
Component: ports Version:
Keywords: Cc: matt.cottrell@…
Port: raxml

Description

RAxML version 7.2.9 released by Alexandros Stamatakis in October 2010 A parallel command line program for constructing phylogenetic trees through maximum likelihood techniques.

http://sco.h-its.org/exelixis

Attachments (2)

raxml_port_mattoates.tar.gz (1.4 KB) - added by mattoates@… 13 years ago.
Portfile for RAxML with directory structure
Portfile (1.9 KB) - added by mattoates@… 13 years ago.
RAxML 7.2.9 Portfile

Download all attachments as: .zip

Change History (6)

Changed 13 years ago by mattoates@…

Attachment: raxml_port_mattoates.tar.gz added

Portfile for RAxML with directory structure

Changed 13 years ago by mattoates@…

Attachment: Portfile added

RAxML 7.2.9 Portfile

comment:1 Changed 13 years ago by mf2k (Frank Schima)

Keywords: new Portfile removed
Port: raxml added
Version: 2.0.3

comment:2 in reply to:  1 Changed 13 years ago by matt.cottrell@…

I need this raxml port to satisfy a dependency in the py27-qiime port that I am making. It builds and I use it in my work as a microbial oceanographer. This raxml port would be a very useful addition to MacPorts because it is a tool used by a wide range of scientists using phylogenetic analysis of DNA and protein sequences in their work. Could someone take a look at it and commit?

comment:3 Changed 13 years ago by matt.cottrell@…

Cc: matt.cottrell@… added

Cc Me!

comment:4 Changed 12 years ago by jmroot (Joshua Root)

Resolution: fixed
Status: newclosed

Committed in r94486 with some changes:

  • Fixed to use correct CFLAGS, LDFLAGS and CC
  • Made default status of sse3 variant conditional on whether sse3 is available
  • Added check that mpi variant is not set before making pthreads default
  • Corrected license version range
  • Cleaned up whitespace
Note: See TracTickets for help on using tickets.