doxygen 1.8.9.1 build error with flex 2.6.0

[sxcurry@…]

Mac OSX 10.11.1 - Latest Xcode Building doxygen returns Error: org.macports.build for port doxygen returned: command execution failed I have tried selfupdate and port clean doxygen See attached build log file for various errors

[sxcurry@…]

doxygen build log file

[mf2k (Frank Schima)]

In the future, please fill in the Port field.

[mndavidoff (Monte Davidoff)]

This problem seems to have appeared after the upgrade to flex @2.6.0_0. It appears a fix for the problem has been committed upstream:

​https://github.com/doxygen/doxygen/commit/8c51120ad55b440b738ef0b96f8169d84a7ae88a

[mndavidoff (Monte Davidoff)]

Cc Me!

[ryandesign (Ryan Carsten Schmidt)]

That commit contains a typo which was fixed here:

​https://github.com/doxygen/doxygen/commit/a8c73cdbe37cc53c398002d20e94037552a8fb55

[ryandesign (Ryan Carsten Schmidt)]

Has duplicate #49896.

[ryandesign (Ryan Carsten Schmidt)]

Those diffs don't apply cleanly to 1.8.9.1; we should update to 1.8.10 first.

[don@…]

sorry to sound like a noob here - but could you point me in the right direction to instructions on how to use the patch files to upgrade doxygen to 1.8.10?

Much appreciated.

[dw@…]

Given that the 1.8.10 ticket looks to be a while off:

I've implemented a very simple patch that make the amendments to the 1.8.9.1 source as per the doxygen commits above. It's my first submission so I'm expecting it to be wrong somehow. I've built doxygen and several packages that depend on it without issue.

The diff I've attached contains both the diffs to the doxygen source and the diff to the Portfile.

[dw@…]

Cc Me!

[dw@…]

updated to actually include the patch to the src.

[Dmole (Tim)]

Cc Me!

[ryandesign (Ryan Carsten Schmidt)]

Has duplicate #49939.

[konrad@…]

Cc Me!

[ryandesign (Ryan Carsten Schmidt)]

Has duplicate #49949.

[m.rick@…]

Cc Me!

[e.schrama@…]

Cc Me!

[davidrobertwhite@…]

Cc Me!

[ivangeloff@…]

Cc Me!

[ivangeloff@…]

Applying the patch fixed the problem for me. Thanks!

(OS X 10.11, XCode 7.2, flex 2.6.0)

[hapaguy (Brian Kurt Fujikawa)]

Cc Me!

[m.rick@…]

Replying to don@…:

sorry to sound like a noob here - but could you point me in the right direction to instructions on how to use the patch files to upgrade doxygen to 1.8.10?

Much appreciated.

Does like described here. ​http://nerdwin15.com/2013/12/fixing-mod_jk-macport-on-osx-mavericks/

[m.rick@…]

The patch doesn't work for me, where is patch-flex_2_6_0.diff ?

--->  Computing dependencies for doxygen
--->  Fetching distfiles for doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://lil.fr.distfiles.macports.org/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://mse.uk.distfiles.macports.org/sites/distfiles.macports.org/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://nue.de.distfiles.macports.org/macports/distfiles/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://fco.it.distfiles.macports.org/mirrors/macports-distfiles/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://osl.no.distfiles.macports.org/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://distfiles.macports.org/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://sea.us.distfiles.macports.org/macports/distfiles/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://cjj.kr.distfiles.macports.org/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://jog.id.distfiles.macports.org/macports/mpdistfiles/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://aarnet.au.distfiles.macports.org/pub/macports/mpdistfiles/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://ykf.ca.distfiles.macports.org/MacPorts/mpdistfiles/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://ftp.stack.nl/pub/users/dimitri/
--->  Attempting to fetch patch-flex_2_6_0.diff from ftp://ftp.stack.nl/pub/users/dimitri/
--->  Attempting to fetch patch-flex_2_6_0.diff from http://her.gr.distfiles.macports.org/mirrors/macports/mpdistfiles/doxygen
--->  Attempting to fetch patch-flex_2_6_0.diff from http://svn.macports.org/repository/macports/distfiles/doxygen
Error: org.macports.fetch for port doxygen returned: fetch failed

[dw@…]

Please clean your tree then try reapplying the patch. patch-flex_2_6_0.diff should've been created when applying the patch I submitted.

Assuming you have the patch in your home directory try:

$ sudo su -
# cd /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/
# patch -s -p0 < /Users/<username>/doxygen_flex2_6_0.diff

Replace "<username>" with your actual username.

You should then find that the file patch-flex_2_6_0.diff is in the "files" subdirectory. I'm sure you can probably do it in one line but the above works reliably for me.

Then retry your port install.

[m.rick@…]

Thank you, it did the work with su and copying doxygen_flex2_6_0.diff to /var/root

I cleaned with port clean -all doxygen I had to reapply the patch and it created a new folder …/doxygen/files/doxygen containing the file patch-flex_2_6_0

but the build didn't work while it seems to have applied the patches.

--->  Computing dependencies for doxygen
--->  Fetching distfiles for doxygen
--->  Attempting to fetch doxygen-1.8.9.1.src.tar.gz from http://lil.fr.distfiles.macports.org/doxygen
--->  Verifying checksums for doxygen                                                
--->  Extracting doxygen
--->  Applying patches to doxygen
--->  Configuring doxygen
--->  Building doxygen
Error: org.macports.build for port doxygen returned: command execution failed
Please see the log file for port doxygen for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/main.log
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port doxygen failed

[m.rick@…]

I got it to work.

1. port clean -all doxygen
2. port selfupdate
3. sudo su -
4. cp ~/desktop/doxygen_flex2_6_0.diff /var/root
5. cd /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/
6. patch -s -p0 < ~/doxygen_flex2_6_0.diff
7. Portfile
8. logout
9. sudo cp ~/doxygen_flex2_6_0.diff /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/files
10. sudo cp /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/doxygen/files/patch-flex_2_6_0.diff /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/files
11. port -f install doxygen

--->  Computing dependencies for doxygen
--->  Fetching distfiles for doxygen
--->  Attempting to fetch doxygen-1.8.9.1.src.tar.gz from http://lil.fr.distfiles.macports.org/doxygen
--->  Verifying checksums for doxygen                                                
--->  Extracting doxygen
--->  Applying patches to doxygen
--->  Configuring doxygen
--->  Building doxygen
--->  Staging doxygen into destroot
--->  Installing doxygen @1.8.9.1_0
--->  Activating doxygen @1.8.9.1_0
--->  Cleaning doxygen
--->  Updating database of binaries
--->  Scanning binaries for linking errors
--->  No broken files found.

[dw@…]

Updated my instructions in comment 22, I was already root when I'd made the patch and instructions.

What are steps 9 & 10 doing? Looks like they're copying the file back over itself? Or am I missing something?

[e.schrama@…]

Replying to m.rick@…:

I got it to work.

Confirmed, this works, thanks.

1. port clean -all doxygen
2. port selfupdate
3. sudo su -
4. cp ~/desktop/doxygen_flex2_6_0.diff /var/root
5. cd /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/
6. patch -s -p0 < ~/doxygen_flex2_6_0.diff
7. Portfile
8. logout
9. sudo cp /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/doxygen/files/patch-flex_2_6_0.diff /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/files
10. sudo cp /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/doxygen/files/patch-flex_2_6_0.diff /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/files
11. port -f install doxygen

--->  Computing dependencies for doxygen
--->  Fetching distfiles for doxygen
--->  Attempting to fetch doxygen-1.8.9.1.src.tar.gz from http://lil.fr.distfiles.macports.org/doxygen
--->  Verifying checksums for doxygen                                                
--->  Extracting doxygen
--->  Applying patches to doxygen
--->  Configuring doxygen
--->  Building doxygen
--->  Staging doxygen into destroot
--->  Installing doxygen @1.8.9.1_0
--->  Activating doxygen @1.8.9.1_0
--->  Cleaning doxygen
--->  Updating database of binaries
--->  Scanning binaries for linking errors
--->  No broken files found.

[dbevans (David B. Evans)]

Has further duplicates #49973, #49994, #50005, #50006.

[neverpanic (Clemens Lang)]

Fixed and updated to 1.8.10 in r143539, see also #48231.

[m.rick@…]

Replying to dw@…:

Updated my instructions in comment 22, I was already root when I'd made the patch and instructions.

What are steps 9 & 10 doing? Looks like they're copying the file back over itself? Or am I missing something?

Yes I mistaken I copied/pasted twice the same. I corrected thank you. The path file if copied one level over because for some reasons, the patch creates a new /doxygen/files directory.

You can use the move command as well, but I used copy to make a copy of the original file instead.

[davidrobertwhite@…]

Cc Me!

[ivangeloff@…]

Cc Me!